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IMGVR_UViG_3300026211_000001-3300026211-Ga0208132_100030922
Arc-VirIMGVR_UViG_3300026211_000001-3300026211-Ga0208132_100030922
Identity
- Kingdom:
- archaea
Quality
89.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 114-304
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vccA00 | 3.30.66.10 | Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain | 0.55 | 22.0 | 3.42e-01 | 100.0% | 90.9% |
| 2heqA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 17.0 | 3.03e-01 | 77.5% | 90.7% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.53 | 27.0 | 3.59e-01 | 81.2% | 91.2% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.51 | 29.0 | 3.44e-01 | 74.3% | 80.2% |
D2
high
residues 386-516
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5t3wA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 44.0 | 4.39e-01 | 82.4% | 65.0% |
| 2r5uC00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.62 | 41.0 | 4.11e-01 | 77.1% | 63.8% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 29.0 | 2.93e-01 | 100.0% | 47.1% |
| 3mesA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.54 | 44.0 | 3.43e-01 | 87.0% | 85.7% |
| 1xg7A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.53 | 37.0 | 3.70e-01 | 73.3% | 93.0% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.53 | 35.0 | 2.87e-01 | 100.0% | 35.5% |
| 5hdiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 41.0 | 2.95e-01 | 86.3% | 67.8% |
| 4p9fA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.51 | 37.0 | 3.67e-01 | 77.1% | 91.7% |
| 7qoaA01 | 1.10.4160.10 | Mainly Alpha › Orthogonal Bundle › Hydantoin permease › Hydantoin permease | 0.51 | 41.0 | 3.02e-01 | 88.5% | 82.1% |
| 1hw1A02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.50 | 34.0 | 3.31e-01 | 94.7% | 59.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3949201 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.59 | 53.0 | 4.84e-01 | 100.0% | 97.1% |
| 3220229 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.57 | 29.0 | 3.05e-01 | 100.0% | 52.5% |
| 3504717 | 106.1.1.8 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like | 0.56 | 42.0 | 4.07e-01 | 79.4% | 80.7% |
| 4932988 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 38.0 | 4.13e-01 | 74.0% | 93.3% |
| 4954922 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 38.0 | 4.09e-01 | 73.3% | 92.4% |
| 5012580 | 101.1.10.76 ↗ | alpha arrays › HTH › HTH › Cyclin-like › HTH_23 | 0.52 | 38.0 | 3.99e-01 | 74.8% | 86.1% |
| 3813322 | 109.4.1.927 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN | 0.52 | 45.0 | 3.85e-01 | 95.4% | 80.0% |
| 3720341 | 109.26.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C | 0.50 | 43.0 | 3.51e-01 | 93.9% | 70.4% |
| 3890439 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 28.0 | 2.90e-01 | 100.0% | 56.0% |
D3
medium
residues 308-324_517-558_579-643
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j5wB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.67 | 45.0 | 3.81e-01 | 100.0% | 42.8% |
| 4ebgA00 | 3.10.450.560 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 37.0 | 4.11e-01 | 83.1% | 82.5% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 35.0 | 3.88e-01 | 83.1% | 79.0% |
| 2pmeA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 50.0 | 3.73e-01 | 100.0% | 52.7% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 31.0 | 3.52e-01 | 84.7% | 73.7% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 32.0 | 3.59e-01 | 100.0% | 75.8% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 40.0 | 2.92e-01 | 81.5% | 42.4% |
| 2a1vA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 34.0 | 3.30e-01 | 96.8% | 60.9% |
| 3cueB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.51 | 35.0 | 3.22e-01 | 71.8% | 91.6% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.50 | 38.0 | 3.05e-01 | 81.5% | 100.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932671 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.67 | 49.0 | 3.56e-01 | 100.0% | 28.6% |
| 3934802 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.62 | 30.0 | 3.39e-01 | 80.6% | 58.9% |
| 3962288 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.62 | 43.0 | 4.24e-01 | 100.0% | 67.7% |
| 4964178 | 319.1.1.29 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DUF7127 | 0.61 | 30.0 | 3.71e-01 | 90.3% | 75.3% |
| 3480012 | 304.113.1.3 ↗ | a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › JAG1 | 0.60 | 35.0 | 3.74e-01 | 100.0% | 63.6% |
| 4030396 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.60 | 43.0 | 4.30e-01 | 100.0% | 70.8% |
| 4028149 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.59 | 38.0 | 4.17e-01 | 99.2% | 83.2% |
| 3929899 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 34.0 | 3.45e-01 | 100.0% | 57.5% |
| 3661509 | 331.4.1.12 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF7148 | 0.57 | 43.0 | 4.28e-01 | 100.0% | 76.2% |
| 1503842 | 9.27.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa | 0.55 | 31.0 | 3.23e-01 | 71.8% | 58.8% |
| 3736867 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.54 | 35.0 | 3.34e-01 | 100.0% | 54.4% |
| 3511260 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.53 | 40.0 | 3.43e-01 | 78.2% | 51.1% |
| 5050788 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.52 | 47.0 | 3.43e-01 | 100.0% | 59.4% |
| 6641 | 241.11.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR | 0.51 | 34.0 | 3.36e-01 | 96.8% | 64.1% |
D4
medium
residues 325-379
Domain cluster:
representative
CATH (58)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gnlB02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.92 | 78.0 | 7.13e-01 | 89.1% | 73.5% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.88 | 76.0 | 7.25e-01 | 92.7% | 93.5% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.87 | 74.0 | 6.37e-01 | 90.9% | 76.5% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.86 | 75.0 | 7.08e-01 | 94.5% | 81.5% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.85 | 68.0 | 7.21e-01 | 92.7% | 95.9% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.85 | 63.0 | 5.15e-01 | 78.2% | 45.3% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.83 | 72.0 | 6.84e-01 | 94.5% | 93.8% |
| 3qweA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.81 | 73.0 | 4.60e-01 | 98.2% | 20.8% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.80 | 70.0 | 5.54e-01 | 98.2% | 92.9% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.80 | 65.0 | 5.55e-01 | 94.5% | 56.5% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.80 | 70.0 | 6.56e-01 | 98.2% | 82.1% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.79 | 67.0 | 6.52e-01 | 92.7% | 95.1% |
| 3qf7A02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 67.0 | 6.42e-01 | 92.7% | 92.1% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.79 | 69.0 | 4.55e-01 | 96.4% | 96.7% |
| 1zbtA01 | 6.10.140.1950 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 68.0 | 5.92e-01 | 96.4% | 83.1% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.78 | 69.0 | 4.91e-01 | 98.2% | 97.5% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 64.0 | 4.45e-01 | 92.7% | 28.0% |
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.76 | 65.0 | 5.10e-01 | 96.4% | 49.6% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.76 | 62.0 | 4.91e-01 | 94.5% | 43.6% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.76 | 66.0 | 5.14e-01 | 98.2% | 45.3% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.76 | 68.0 | 6.45e-01 | 100.0% | 90.6% |
| 4abyD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 58.0 | 3.61e-01 | 100.0% | 15.1% |
| 1f6fA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.74 | 62.0 | 4.36e-01 | 96.4% | 90.2% |
| 4abxA02 | 6.10.140.1090 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 64.0 | 5.50e-01 | 98.2% | 67.8% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.74 | 61.0 | 6.02e-01 | 94.5% | 98.3% |
| 2x9xA04 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 60.0 | 6.04e-01 | 90.9% | 98.1% |
| 2np9A01 | 1.20.58.1300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 64.0 | 4.81e-01 | 98.2% | 88.1% |
| 3craA02 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.74 | 62.0 | 4.76e-01 | 94.5% | 43.0% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.74 | 60.0 | 5.14e-01 | 100.0% | 56.2% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.73 | 60.0 | 4.62e-01 | 96.4% | 39.4% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 61.0 | 6.00e-01 | 94.5% | 95.0% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 61.0 | 5.73e-01 | 98.2% | 77.5% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 56.0 | 5.18e-01 | 94.5% | 64.9% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.72 | 60.0 | 4.67e-01 | 94.5% | 84.9% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 60.0 | 5.90e-01 | 98.2% | 86.4% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.72 | 61.0 | 5.72e-01 | 98.2% | 80.0% |
| 2ch7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.72 | 59.0 | 3.70e-01 | 94.5% | 99.4% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 59.0 | 5.62e-01 | 94.5% | 81.8% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.71 | 59.0 | 3.86e-01 | 96.4% | 21.0% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.70 | 58.0 | 4.32e-01 | 98.2% | 35.3% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 58.0 | 5.18e-01 | 96.4% | 72.8% |
| 2pqrA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 51.0 | 4.31e-01 | 81.8% | 46.2% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.70 | 62.0 | 4.48e-01 | 100.0% | 73.7% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 53.0 | 4.36e-01 | 87.3% | 45.4% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.68 | 47.0 | 3.29e-01 | 72.7% | 24.4% |
| 1vp7A00 | 1.10.287.1040 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit | 0.68 | 53.0 | 5.04e-01 | 90.9% | 73.5% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 57.0 | 5.52e-01 | 100.0% | 90.5% |
| 1qu7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.67 | 56.0 | 3.81e-01 | 100.0% | 27.3% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.66 | 53.0 | 4.78e-01 | 96.4% | 76.5% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 53.0 | 5.26e-01 | 96.4% | 93.1% |
| 2itbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 53.0 | 3.78e-01 | 98.2% | 27.8% |
| 1kt1A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 54.0 | 3.98e-01 | 98.2% | 51.3% |
| 2m6bA00 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.64 | 53.0 | 3.93e-01 | 96.4% | 43.3% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.63 | 52.0 | 4.68e-01 | 100.0% | 65.4% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.62 | 51.0 | 4.77e-01 | 100.0% | 83.8% |
| 2v6eA01 | 1.10.287.3180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 52.0 | 4.76e-01 | 100.0% | 76.0% |
| 3nkuA00 | 1.10.357.170 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.60 | 54.0 | 3.76e-01 | 100.0% | 31.2% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 45.0 | 4.63e-01 | 85.5% | 90.6% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3380124 | 109.4.1.1266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB | 0.89 | 79.0 | 4.68e-01 | 96.4% | 15.6% |
| 4966858 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.89 | 66.0 | 3.72e-01 | 78.2% | 8.7% |
| 3708354 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.89 | 76.0 | 4.69e-01 | 90.9% | 19.6% |
| 5048605 | 5069.1.3.60 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › OST3_OST6 | 0.86 | 73.0 | 5.73e-01 | 92.7% | 59.1% |
| 3608012 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.86 | 75.0 | 6.36e-01 | 94.5% | 64.7% |
| 3607086 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.84 | 74.0 | 6.48e-01 | 96.4% | 68.8% |
| 3705324 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.84 | 69.0 | 6.02e-01 | 90.9% | 61.3% |
| 5062526 | 3892.1.1.1 ↗ | alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II › PNTB | 0.84 | 73.0 | 4.57e-01 | 96.4% | 20.0% |
| 3876359 | 4207.1.2.105 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › PF26705 | 0.83 | 73.0 | 5.68e-01 | 98.2% | 50.4% |
| 2896608 | 150.3.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine | 0.83 | 67.0 | 5.07e-01 | 87.3% | 39.3% |
| 4953126 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.83 | 75.0 | 4.80e-01 | 100.0% | 74.5% |
| 4941676 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.83 | 75.0 | 5.16e-01 | 100.0% | 99.4% |
| 4965518 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.82 | 73.0 | 5.85e-01 | 98.2% | 54.3% |
| 3531403 | 3914.1.1.0 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain | 0.82 | 67.0 | 6.98e-01 | 92.7% | 96.0% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.82 | 70.0 | 5.86e-01 | 96.4% | 57.9% |
| 3172138 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.82 | 69.0 | 6.54e-01 | 94.5% | 78.5% |
| 3348828 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.81 | 68.0 | 3.77e-01 | 90.9% | 7.5% |
| 3718969 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.81 | 68.0 | 4.73e-01 | 92.7% | 29.7% |
| 4846601 | 603.5.1.1 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN | 0.81 | 73.0 | 5.52e-01 | 98.2% | 52.5% |
| 2503462 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.81 | 69.0 | 5.73e-01 | 94.5% | 56.4% |
| 3757999 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.80 | 73.0 | 4.48e-01 | 100.0% | 98.6% |
| 3713097 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 68.0 | 4.15e-01 | 94.5% | 38.3% |
| 5041772 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.80 | 68.0 | 5.57e-01 | 98.2% | 83.8% |
| 4077176 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.80 | 71.0 | 5.98e-01 | 98.2% | 87.8% |
| 4146380 | 4133.1.1.2 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 | 0.79 | 67.0 | 5.07e-01 | 94.5% | 65.4% |
| 3506760 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.79 | 69.0 | 5.17e-01 | 96.4% | 49.2% |
| 3705683 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.79 | 70.0 | 5.71e-01 | 98.2% | 62.0% |
| 3588414 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.79 | 66.0 | 3.74e-01 | 89.1% | 20.4% |
| 3979729 | 3755.3.1.500 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › IpaC_SipC | 0.79 | 71.0 | 5.46e-01 | 100.0% | 45.8% |
| 3969893 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.78 | 70.0 | 6.64e-01 | 100.0% | 84.6% |
| 5048239 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.78 | 67.0 | 5.32e-01 | 98.2% | 48.7% |
| 4961961 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.78 | 70.0 | 6.33e-01 | 100.0% | 77.3% |
| 3240469 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.78 | 65.0 | 5.73e-01 | 96.4% | 64.7% |
| 3952795 | 3892.1.1.1 ↗ | alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II › PNTB | 0.78 | 65.0 | 4.07e-01 | 92.7% | 51.1% |
| 3555578 | 633.22.1.15 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › OST3_OST6 | 0.77 | 66.0 | 5.33e-01 | 100.0% | 84.5% |
| 3857829 | 2485.1.1.17 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 | 0.76 | 66.0 | 5.33e-01 | 100.0% | 84.5% |
| 4030051 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.74 | 62.0 | 3.71e-01 | 98.2% | 13.3% |
| 3614747 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.73 | 61.0 | 3.96e-01 | 96.4% | 25.4% |
| 3410365 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.73 | 62.0 | 3.79e-01 | 100.0% | 20.8% |
| 4258322 | 5086.1.1.189 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB | 0.72 | 62.0 | 5.75e-01 | 98.2% | 84.3% |
| 3400200 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 62.0 | 4.77e-01 | 100.0% | 45.6% |
| 3486871 | 192.10.1.5 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › Helical_CED_Drosha | 0.70 | 59.0 | 5.80e-01 | 98.2% | 95.0% |
| 5056427 | 3843.1.1.38 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › T4SS_pilin | 0.70 | 58.0 | 4.70e-01 | 96.4% | 50.9% |
| 4645599 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.69 | 58.0 | 3.56e-01 | 98.2% | 15.5% |
| 3601807 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 59.0 | 3.34e-01 | 98.2% | 71.4% |
| 3614039 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.66 | 59.0 | 3.36e-01 | 100.0% | 20.3% |
| 3598135 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.66 | 53.0 | 4.74e-01 | 96.4% | 65.9% |
| 3482907 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.65 | 53.0 | 4.33e-01 | 98.2% | 47.8% |
D5
medium
residues 559-578_644-696
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 42.0 | 4.76e-01 | 98.6% | 96.3% |
| 3uo9C01 | 1.10.238.210 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.58 | 39.0 | 3.86e-01 | 79.5% | 66.2% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.52 | 39.0 | 3.77e-01 | 83.6% | 75.3% |