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IMGVR_UViG_3300026255_000049-3300026255-Ga0209613_10037531
Arc-VirIMGVR_UViG_3300026255_000049-3300026255-Ga0209613_10037531
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-104
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.81 | 69.0 | 6.53e-01 | 100.0% | 78.4% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.77 | 62.0 | 6.65e-01 | 100.0% | 100.0% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.67 | 60.0 | 6.05e-01 | 98.8% | 100.0% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 53.0 | 5.56e-01 | 95.1% | 97.3% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.66 | 50.0 | 4.51e-01 | 80.5% | 75.5% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 45.0 | 4.80e-01 | 81.7% | 83.3% |
| 6lcuA02 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.65 | 54.0 | 5.02e-01 | 91.5% | 78.1% |
| 3psfA02 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.65 | 58.0 | 4.82e-01 | 100.0% | 61.8% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 40.0 | 4.14e-01 | 76.8% | 65.4% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 52.0 | 4.09e-01 | 89.0% | 55.4% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 43.0 | 2.76e-01 | 70.7% | 43.4% |
| 2ipcA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.63 | 42.0 | 3.00e-01 | 76.8% | 23.6% |
| 2q0iA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.61 | 48.0 | 3.30e-01 | 86.6% | 33.7% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.59 | 44.0 | 4.31e-01 | 81.7% | 77.2% |
| 3pvlA03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.59 | 43.0 | 3.85e-01 | 78.0% | 58.5% |
| 4xaiB02 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.58 | 50.0 | 3.88e-01 | 100.0% | 67.3% |
| 1jwnA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 49.0 | 4.13e-01 | 100.0% | 71.0% |
| 2p6vA00 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.56 | 45.0 | 4.27e-01 | 89.0% | 74.2% |
| 1pduA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.55 | 48.0 | 3.54e-01 | 100.0% | 56.5% |
| 3w6bB00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.55 | 45.0 | 3.78e-01 | 95.1% | 84.3% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.55 | 39.0 | 3.73e-01 | 75.6% | 100.0% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 4.17e-01 | 85.4% | 85.1% |
| 3zgzA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.53 | 39.0 | 3.10e-01 | 79.3% | 57.1% |
| 2lsgA00 | 1.20.58.1280 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain | 0.53 | 38.0 | 3.63e-01 | 75.6% | 63.9% |
| 1t98A02 | 1.20.58.590 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain | 0.53 | 37.0 | 2.95e-01 | 72.0% | 67.5% |
| 3swhA01 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.53 | 39.0 | 3.13e-01 | 79.3% | 55.2% |
| 7d1tA01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.53 | 39.0 | 3.06e-01 | 78.0% | 80.8% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.53 | 39.0 | 3.75e-01 | 81.7% | 84.7% |
| 6cxtB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 38.0 | 3.56e-01 | 81.7% | 64.3% |
| 6t0bc02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.52 | 38.0 | 2.90e-01 | 76.8% | 92.7% |
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.51 | 41.0 | 3.54e-01 | 93.9% | 100.0% |
| 3rmiA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.51 | 38.0 | 3.58e-01 | 80.5% | 73.3% |
| 3owaA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 36.0 | 2.95e-01 | 76.8% | 67.3% |
| 2qe9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.51 | 38.0 | 3.01e-01 | 78.0% | 86.7% |
| 2fp1B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.50 | 42.0 | 3.47e-01 | 96.3% | 68.3% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.50 | 41.0 | 4.09e-01 | 96.3% | 93.1% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 36.0 | 3.37e-01 | 75.6% | 85.4% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4014657 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 51.0 | 6.04e-01 | 81.7% | 100.0% |
| 3998882 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 57.0 | 5.72e-01 | 100.0% | 84.7% |
| 5040720 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.69 | 55.0 | 3.71e-01 | 85.4% | 47.5% |
| 55657 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.69 | 50.0 | 4.86e-01 | 75.6% | 96.7% |
| 5043976 | 3678.1.1.0 ↗ | alpha arrays › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain | 0.67 | 59.0 | 5.24e-01 | 100.0% | 76.7% |
| 3708461 | 545.1.1.2 ↗ | alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27 › CLAMP | 0.66 | 59.0 | 4.92e-01 | 100.0% | 66.2% |
| 147066 | 3275.1.1.1 ↗ | alpha complex topology › Hypothetical protein ORF239 › Hypothetical protein ORF239 › Hypothetical protein ORF239 › ORF239-like | 0.63 | 52.0 | 4.09e-01 | 89.0% | 55.4% |
| 4928130 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.61 | 47.0 | 4.63e-01 | 84.1% | 80.0% |
| 4961944 | 192.15.1.225 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF4212 | 0.60 | 39.0 | 3.80e-01 | 100.0% | 57.9% |
| 4351255 | 191.1.1.91 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › PF29842 | 0.58 | 43.0 | 4.17e-01 | 79.3% | 71.1% |
| None | — | 0.57 | 44.0 | 3.84e-01 | 86.6% | 54.8% | |
| 4950248 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.56 | 41.0 | 3.95e-01 | 79.3% | 68.4% |
| 3269776 | 2007.2.3.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK | 0.55 | 43.0 | 3.35e-01 | 86.6% | 68.0% |
| 3916954 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.55 | 42.0 | 3.50e-01 | 81.7% | 76.6% |
| 3925286 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 44.0 | 3.22e-01 | 90.2% | 89.8% |
| 5053551 | 3241.1.1.1 ↗ | alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 | 0.55 | 40.0 | 2.97e-01 | 76.8% | 74.3% |
| 4066209 | 101.1.2.498 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25870 | 0.54 | 41.0 | 3.23e-01 | 82.9% | 37.8% |
| 3181323 | 192.29.1.296 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ceramidase | 0.53 | 35.0 | 3.03e-01 | 100.0% | 41.8% |
| 3604971 | 102.1.3.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › PAP_assoc | 0.53 | 37.0 | 2.83e-01 | 74.4% | 83.3% |
| 3265617 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 38.0 | 3.64e-01 | 78.0% | 66.7% |
| 3220098 | 633.23.1.14 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_3 | 0.52 | 44.0 | 3.52e-01 | 100.0% | 82.1% |
| 5051767 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.52 | 36.0 | 3.81e-01 | 73.2% | 89.3% |
| 3481299 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.52 | 37.0 | 4.05e-01 | 75.6% | 95.4% |
| 5056427 | 3843.1.1.38 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › T4SS_pilin | 0.51 | 39.0 | 3.55e-01 | 81.7% | 87.3% |
| 4028749 | 627.1.1.1 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 | 0.51 | 43.0 | 3.64e-01 | 100.0% | 91.6% |
| 3383195 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 38.0 | 2.91e-01 | 82.9% | 30.9% |
| 3585393 | 633.7.1.11 ↗ | alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like › XK-related | 0.51 | 43.0 | 3.32e-01 | 100.0% | 74.0% |
| 4935676 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.51 | 36.0 | 3.34e-01 | 75.6% | 77.3% |
| 3921258 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.51 | 36.0 | 3.57e-01 | 76.8% | 75.6% |
| 4665482 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 38.0 | 2.92e-01 | 81.7% | 36.9% |
| 4943201 | 181.1.1.32 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54 | 0.50 | 36.0 | 3.62e-01 | 79.3% | 77.6% |
| 3657376 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 36.0 | 2.93e-01 | 78.0% | 89.4% |
D2
high
residues 117-189
Domain cluster:
rep: MH825712.1__AYD87310.1__SEA_VALENTINIPUFF_6__00006__D248-311