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IMGVR_UViG_3300026261_000079-3300026261-Ga0208524_10053945

Arc-Vir

IMGVR_UViG_3300026261_000079-3300026261-Ga0208524_10053945

Identity

Kingdom:
archaea

Quality

77.6 mean pLDDT

Cluster

View cluster (166 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 44-59_83-128
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21703.4 best Gp10A-like 68.7 9.90e-19 93.5% 17.3%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kzpB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 44.0 2.93e-01 93.5% 47.3%
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.53 41.0 2.74e-01 85.5% 37.9%
2vx3C02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 40.0 2.74e-01 85.5% 35.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3276479 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.63 44.0 3.05e-01 74.2% 24.9%
4999300 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.54 39.0 2.70e-01 80.6% 26.0%
3959053 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 40.0 2.95e-01 90.3% 37.3%
D2 medium residues 129-324
PDB
Domain cluster: rep: DQ340064.2__ABC61276.1__X__00022__D272-425
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21703.4 best Gp10A-like 181.1 5.10e-53 99.0% 72.6%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e0zC03 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.79 40.0 5.66e-01 95.4% 100.0%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.67 41.0 5.13e-01 95.4% 97.5%
1dbfA00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.60 34.0 4.14e-01 96.9% 84.3%
4liqE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 23.0 3.44e-01 89.3% 92.3%
6lynD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 25.0 3.59e-01 89.8% 95.4%
2nykA02 2.60.40.2530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 22.0 3.23e-01 95.9% 86.2%
1fi8C00 2.60.40.550 Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin 0.52 20.0 3.00e-01 73.0% 82.1%
2znhA03 6.20.40.10 Special › Other non-globular › Porin MspA ribbon fold › 0.50 15.0 2.66e-01 93.9% 91.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3090875 2485.3.1.14 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.86 83.0 6.99e-01 100.0% 64.6%
2988313 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.86 66.0 5.83e-01 100.0% 57.0%
3110786 2485.3.1.14 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.86 83.0 6.64e-01 100.0% 59.9%
3075730 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.85 81.0 6.66e-01 100.0% 60.2%
4929755 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.79 67.0 5.90e-01 100.0% 63.3%
3513770 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.74 65.0 5.55e-01 99.5% 60.1%
4884207 2485.3.1.7 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.74 61.0 5.25e-01 99.5% 57.9%
3946670 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.73 62.0 5.43e-01 100.0% 62.5%
2651377 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.73 63.0 5.37e-01 100.0% 59.3%
4241362 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.72 62.0 5.32e-01 100.0% 59.3%
5083051 2485.3.1.12 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.72 61.0 5.26e-01 100.0% 60.0%
4954548 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.70 62.0 5.50e-01 100.0% 66.9%
2841509 2485.3.1.12 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.68 57.0 4.93e-01 99.0% 58.5%
5041371 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.68 65.0 5.43e-01 100.0% 63.2%
2995627 2485.3.1.7 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.66 57.0 4.86e-01 100.0% 59.0%
5081487 2485.3.1.10 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.66 59.0 5.24e-01 100.0% 67.8%
4890673 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.65 62.0 5.01e-01 100.0% 61.9%
3588084 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.60 52.0 4.46e-01 99.5% 59.0%
4983910 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 22.0 2.65e-01 97.4% 56.9%