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IMGVR_UViG_3300026290_000012-3300026290-Ga0209510_100040241
Arc-VirIMGVR_UViG_3300026290_000012-3300026290-Ga0209510_100040241
Identity
- Kingdom:
- archaea
Quality
91.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-45
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6e4nA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.71 | 51.0 | 4.46e-01 | 79.5% | 59.2% |
| 2w82A03 | 1.10.10.1190 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Antirestriction protein ArdA, domain 3 | 0.68 | 49.0 | 4.47e-01 | 79.5% | 100.0% |
| 4ab7H02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.66 | 54.0 | 3.81e-01 | 100.0% | 27.6% |
| 1wxnA00 | 2.20.20.10 | Mainly Beta › Single Sheet › Anthopleurin-A › Anthopleurin-A | 0.66 | 45.0 | 4.64e-01 | 86.4% | 76.2% |
| 1k0mA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.65 | 44.0 | 3.55e-01 | 81.8% | 34.8% |
| 2kx2A00 | 3.30.780.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › | 0.65 | 46.0 | 3.69e-01 | 79.5% | 36.5% |
| 4k30A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 52.0 | 3.64e-01 | 100.0% | 27.5% |
| 3nftA00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.62 | 44.0 | 2.73e-01 | 84.1% | 13.0% |
| 1lfpA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.61 | 50.0 | 4.41e-01 | 100.0% | 91.8% |
| 3l2pA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.60 | 40.0 | 3.44e-01 | 70.5% | 76.1% |
| 1mw7A03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.59 | 49.0 | 4.25e-01 | 100.0% | 93.3% |
| 1pj5A03 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.59 | 43.0 | 2.86e-01 | 79.5% | 29.8% |
| 5xyiK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 3.46e-01 | 81.8% | 55.6% |
| 5hmpB02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 41.0 | 3.64e-01 | 79.5% | 79.7% |
| 1zvpD00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.56 | 46.0 | 3.39e-01 | 100.0% | 67.2% |
| 7k98E03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.56 | 39.0 | 3.49e-01 | 77.3% | 64.7% |
| 1ibaA00 | 3.30.1360.60 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB | 0.55 | 40.0 | 3.49e-01 | 81.8% | 48.7% |
| 2zzzA02 | 3.30.63.10 | Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain | 0.55 | 40.0 | 3.66e-01 | 79.5% | 81.7% |
| 1z8fA02 | 3.30.63.10 | Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain | 0.55 | 39.0 | 3.57e-01 | 79.5% | 81.0% |
| 3wp0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 2.95e-01 | 93.2% | 37.0% |
| 1z6gA02 | 3.30.63.10 | Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain | 0.54 | 39.0 | 3.63e-01 | 79.5% | 81.7% |
| 1kgdA02 | 3.30.63.10 | Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain | 0.54 | 39.0 | 3.64e-01 | 79.5% | 76.7% |
| 1kjwA03 | 3.30.63.10 | Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain | 0.53 | 40.0 | 3.70e-01 | 86.4% | 86.9% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.20e-01 | 84.1% | 50.5% |
| 7txnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.22e-01 | 84.1% | 50.0% |
| 1ejdA01 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.53 | 37.0 | 2.53e-01 | 81.8% | 18.4% |
| 6g1dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.38e-01 | 100.0% | 47.6% |
| 2vlaA03 | 1.10.10.2090 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 38.0 | 2.91e-01 | 84.1% | 49.2% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.51 | 43.0 | 3.78e-01 | 100.0% | 88.4% |
| 4wsiB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 2.74e-01 | 93.2% | 32.7% |
| 4hziB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 36.0 | 2.41e-01 | 81.8% | 23.7% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4562058 | 377.1.1.31 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS | 0.71 | 55.0 | 5.49e-01 | 100.0% | 82.2% |
| 5037944 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.69 | 51.0 | 4.47e-01 | 79.5% | 58.5% |
| 5066439 | 304.3.1.14 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C | 0.68 | 50.0 | 4.40e-01 | 79.5% | 55.4% |
| 4955127 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.68 | 50.0 | 4.33e-01 | 79.5% | 57.1% |
| 5018894 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.67 | 49.0 | 4.36e-01 | 79.5% | 58.5% |
| 4960707 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.67 | 49.0 | 4.34e-01 | 79.5% | 56.9% |
| 5040326 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.66 | 49.0 | 4.29e-01 | 79.5% | 60.0% |
| 4940504 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.66 | 48.0 | 4.38e-01 | 79.5% | 58.3% |
| 3946500 | 306.1.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB | 0.64 | 46.0 | 3.86e-01 | 79.5% | 46.3% |
| 3524949 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.63 | 49.0 | 3.34e-01 | 90.9% | 28.1% |
| 3857959 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 43.0 | 4.21e-01 | 79.5% | 66.0% |
| 4963243 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.62 | 45.0 | 3.92e-01 | 79.5% | 54.3% |
| 4441866 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.62 | 50.0 | 4.47e-01 | 93.2% | 96.9% |
| 4940555 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.62 | 43.0 | 2.72e-01 | 79.5% | 13.5% |
| 3744728 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.62 | 45.0 | 4.44e-01 | 79.5% | 77.1% |
| 5020779 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.60 | 44.0 | 4.08e-01 | 81.8% | 61.7% |
| 5035186 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.59 | 42.0 | 3.81e-01 | 79.5% | 56.9% |
| 4502075 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.59 | 50.0 | 4.36e-01 | 100.0% | 92.9% |
| 3931590 | 207.1.1.156 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 | 0.58 | 46.0 | 2.95e-01 | 95.5% | 22.0% |
| 3474707 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.57 | 46.0 | 3.01e-01 | 93.2% | 32.7% |
| 4256195 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 47.0 | 3.19e-01 | 100.0% | 43.9% |
| 3397637 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.55 | 42.0 | 2.77e-01 | 90.9% | 28.5% |
| 4510425 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.55 | 46.0 | 3.13e-01 | 100.0% | 43.9% |
| 4483715 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 45.0 | 3.10e-01 | 100.0% | 43.9% |
| 4269138 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 45.0 | 3.06e-01 | 100.0% | 42.1% |
| 4061553 | 2004.1.1.208 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 | 0.55 | 45.0 | 3.11e-01 | 100.0% | 43.9% |
| 4321081 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.55 | 45.0 | 3.11e-01 | 100.0% | 44.4% |
| 3931844 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.54 | 41.0 | 2.83e-01 | 90.9% | 35.3% |
| 5050242 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.54 | 45.0 | 3.03e-01 | 100.0% | 40.7% |
| 4055310 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.54 | 45.0 | 3.06e-01 | 100.0% | 43.1% |
| 3623496 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.54 | 41.0 | 2.78e-01 | 90.9% | 32.7% |
| 4354223 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.54 | 44.0 | 3.03e-01 | 100.0% | 43.2% |
| 3910006 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.54 | 45.0 | 2.94e-01 | 100.0% | 50.5% |
| 3894021 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.54 | 43.0 | 2.81e-01 | 93.2% | 30.0% |
| 4477375 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.54 | 45.0 | 3.04e-01 | 100.0% | 42.9% |
| 4239688 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.54 | 44.0 | 2.94e-01 | 100.0% | 41.0% |
| 3798335 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 44.0 | 2.97e-01 | 100.0% | 43.0% |
| 3230011 | 6106.1.1.0 ↗ | extended segments › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY | 0.53 | 36.0 | 2.98e-01 | 70.5% | 55.3% |
| 3712406 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.53 | 44.0 | 2.94e-01 | 100.0% | 42.4% |
| 4296001 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.53 | 44.0 | 2.94e-01 | 100.0% | 45.5% |
| 3603381 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 2.76e-01 | 81.8% | 80.0% |
| 3510416 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.53 | 39.0 | 2.72e-01 | 86.4% | 26.8% |
| 4028643 | 101.1.11.187 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › NOL10_2nd | 0.53 | 39.0 | 3.25e-01 | 79.5% | 48.0% |
| 3580834 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.53 | 44.0 | 2.95e-01 | 100.0% | 43.0% |
| 4461479 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.53 | 42.0 | 2.95e-01 | 100.0% | 44.9% |
| 4012507 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.53 | 44.0 | 2.97e-01 | 100.0% | 45.3% |
| 4515833 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.53 | 43.0 | 2.84e-01 | 100.0% | 37.8% |
| 2393040 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.52 | 43.0 | 2.86e-01 | 100.0% | 40.7% |
| 4982409 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.52 | 41.0 | 2.89e-01 | 100.0% | 77.1% |
| 3482144 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.52 | 41.0 | 2.78e-01 | 97.7% | 31.9% |
| 3193192 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.52 | 43.0 | 2.87e-01 | 100.0% | 47.0% |
| 4305751 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.52 | 42.0 | 2.86e-01 | 100.0% | 44.6% |
| 5010514 | 298.1.1.5 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Semialdhyde_dhC | 0.51 | 38.0 | 2.64e-01 | 86.4% | 94.4% |
| 4190166 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.51 | 42.0 | 2.85e-01 | 100.0% | 58.5% |
| 5062182 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 39.0 | 3.55e-01 | 93.2% | 98.5% |