←Back to structures

IMGVR_UViG_3300026298_000017-3300026298-Ga0209236_10164536

Arc-Vir

IMGVR_UViG_3300026298_000017-3300026298-Ga0209236_10164536

Identity

Kingdom:
archaea

Quality

62.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-85
PDB
Domain cluster: rep: IMGVR_UViG_3300026298_000021-3300026298-Ga0209236_100495311__D35-83
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r7cA02 3.30.428.20 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain 0.65 58.0 4.17e-01 100.0% 73.2%
3hh2D04 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.64 48.0 4.49e-01 80.4% 87.1%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.60 41.0 4.15e-01 71.4% 90.9%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 42.0 3.73e-01 75.0% 88.0%
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.59 49.0 3.86e-01 96.4% 82.9%
1i8nA00 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.57 46.0 4.00e-01 91.1% 65.2%
1c7sA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.83e-01 75.0% 87.9%
7sbeA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.55 39.0 2.66e-01 76.8% 59.2%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 37.0 3.26e-01 71.4% 82.2%
3u31A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.53 39.0 3.26e-01 78.6% 51.5%
1fohA03 3.40.30.20 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Phenol hydroxylase, C-terminal dimerisation domain 0.52 38.0 2.71e-01 83.9% 81.3%
2h5eA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 3.08e-01 92.9% 90.2%
2dkhA03 3.40.30.20 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Phenol hydroxylase, C-terminal dimerisation domain 0.51 37.0 2.67e-01 83.9% 78.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3316151 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.69 47.0 3.04e-01 71.4% 47.3%
4972257 304.104.1.1 ↗ a+b two layers › Alpha-beta plaits › Sulfolobus fructose-1,6-bisphosphatase-like › Sulfolobus fructose-1,6-bisphosphatase-like › FBPase_3 0.63 47.0 2.83e-01 80.4% 30.1%
4158920 1056.1.1.0 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain 0.61 44.0 3.34e-01 76.8% 68.9%
3697945 4.1.1.312 ↗ beta barrels › SH3 › SH3 › SH3 › Med13_N 0.60 41.0 2.80e-01 71.4% 56.1%
3671478 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.59 49.0 3.91e-01 92.9% 77.3%
3362593 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.59 48.0 3.82e-01 91.1% 99.1%
5080080 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.57 41.0 2.53e-01 78.6% 25.5%
3400187 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.56 41.0 3.45e-01 83.9% 75.5%
3937186 221.4.1.21 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › PF30669 0.56 39.0 2.55e-01 76.8% 67.1%
3700662 355.1.1.0 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.56 46.0 4.13e-01 100.0% 95.3%
3406258 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.55 37.0 3.29e-01 71.4% 82.2%
4930160 1.1.2.20 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central 0.54 36.0 2.84e-01 71.4% 65.2%
3490660 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.54 36.0 3.04e-01 71.4% 67.9%
3623052 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.54 39.0 3.23e-01 83.9% 70.8%
3789603 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 37.0 3.04e-01 71.4% 67.3%
3173687 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.54 44.0 3.81e-01 92.9% 94.4%
3681071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.43e-01 98.2% 60.0%
4945301 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.20e-01 94.6% 69.3%
5077796 304.104.1.1 ↗ a+b two layers › Alpha-beta plaits › Sulfolobus fructose-1,6-bisphosphatase-like › Sulfolobus fructose-1,6-bisphosphatase-like › FBPase_3 0.52 39.0 2.46e-01 83.9% 36.4%
4994964 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.51 41.0 2.75e-01 96.4% 22.2%
4072763 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.50 37.0 3.08e-01 85.7% 44.9%
4877615 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.50 34.0 3.12e-01 71.4% 86.6%
D2 high residues 117-178
PDB