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IMGVR_UViG_3300026311_000153-3300026311-Ga0209723_100716714

Arc-Vir

IMGVR_UViG_3300026311_000153-3300026311-Ga0209723_100716714

Identity

Kingdom:
archaea

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 40-69
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.74 51.0 3.05e-01 70.0% 10.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 4.11e-01 100.0% 35.2%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.70 42.0 3.47e-01 90.0% 30.4%
4dovA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 54.0 3.52e-01 100.0% 21.0%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 50.0 3.60e-01 93.3% 67.3%
1vlaA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 45.0 4.16e-01 100.0% 50.0%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.63 49.0 3.25e-01 100.0% 25.0%
4asmB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 45.0 2.57e-01 100.0% 5.6%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 43.0 3.59e-01 100.0% 38.6%
2z1aA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.62 44.0 2.64e-01 90.0% 9.8%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 46.0 3.41e-01 100.0% 34.3%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 44.0 2.70e-01 100.0% 11.1%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 43.0 4.13e-01 100.0% 53.8%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 44.0 3.83e-01 100.0% 58.2%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.57 44.0 2.80e-01 100.0% 15.1%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.56 40.0 3.79e-01 83.3% 51.4%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.56 42.0 3.22e-01 100.0% 33.7%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 41.0 2.38e-01 100.0% 39.7%
2askA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.54 40.0 3.07e-01 100.0% 69.3%
1nubA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 39.0 2.82e-01 93.3% 24.4%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 2.78e-01 96.7% 19.8%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 40.0 2.38e-01 100.0% 9.9%
2py5A05 4.10.80.20 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 0.52 35.0 3.51e-01 83.3% 60.0%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.52 37.0 2.43e-01 90.0% 33.9%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.52 37.0 3.42e-01 100.0% 56.5%
2o8bA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.52 39.0 2.96e-01 93.3% 36.1%
2arpF02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 37.0 2.93e-01 100.0% 33.3%
4nzrM01 3.30.1370.200 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 38.0 2.97e-01 93.3% 92.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598132 301.7.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.74 56.0 3.50e-01 83.3% 15.2%
3899599 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.73 51.0 3.01e-01 100.0% 10.5%
3450430 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 46.0 2.84e-01 73.3% 11.4%
5029523 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.68 43.0 3.73e-01 83.3% 37.5%
2581368 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.66 46.0 4.36e-01 100.0% 53.8%
3761880 356.1.1.0 ↗ few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors 0.66 47.0 4.94e-01 100.0% 92.0%
4021641 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.66 44.0 2.90e-01 83.3% 14.6%
4778908 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 38.0 2.84e-01 93.3% 21.0%
4496501 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 42.0 2.40e-01 93.3% 5.9%
3636403 4001.1.1.4 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.58 44.0 3.12e-01 100.0% 66.9%
4318504 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.58 42.0 2.69e-01 80.0% 14.1%
4243212 109.4.1.1297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.57 40.0 2.15e-01 73.3% 3.2%
3594532 377.12.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 0.57 42.0 2.76e-01 90.0% 16.2%
3240882 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.57 44.0 2.64e-01 90.0% 20.4%
4012190 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 40.0 2.33e-01 100.0% 7.6%
3552874 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.57 45.0 2.56e-01 96.7% 8.6%
4206629 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.56 44.0 3.88e-01 100.0% 60.0%
1443915 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.53 37.0 2.51e-01 83.3% 13.7%
3255458 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.52 37.0 3.81e-01 100.0% 85.7%
3962782 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.51 35.0 2.40e-01 93.3% 15.6%