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IMGVR_UViG_3300026311_000153-3300026311-Ga0209723_100716717
Arc-VirIMGVR_UViG_3300026311_000153-3300026311-Ga0209723_100716717
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-187
Domain cluster:
rep: MH992131.1__QAY18132.1__X__00039__D8-122
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f6gA02 | 3.30.160.340 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.76 | 34.0 | 5.18e-01 | 74.7% | 100.0% |
| 1nbwA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.70 | 31.0 | 3.32e-01 | 71.2% | 47.0% |
| 4e72A01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.63 | 31.0 | 3.42e-01 | 71.9% | 54.8% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.60 | 51.0 | 5.14e-01 | 97.9% | 89.2% |
| 1vpbA01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.59 | 37.0 | 3.18e-01 | 78.8% | 39.6% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 35.0 | 3.56e-01 | 85.6% | 61.3% |
| 2pmqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 35.0 | 3.72e-01 | 78.1% | 69.8% |
| 3f14A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 34.0 | 3.85e-01 | 85.6% | 81.2% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 34.0 | 3.63e-01 | 85.6% | 71.5% |
| 4bnqB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.54 | 42.0 | 3.83e-01 | 80.1% | 92.7% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 36.0 | 3.81e-01 | 85.6% | 76.6% |
| 2r76A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.53 | 44.0 | 4.59e-01 | 92.5% | 95.5% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 34.0 | 3.56e-01 | 84.9% | 72.5% |
| 5aigA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 33.0 | 3.51e-01 | 84.9% | 74.2% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.51 | 32.0 | 3.35e-01 | 77.4% | 66.7% |
| 1tkkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 35.0 | 3.96e-01 | 71.9% | 98.3% |
| 1kczA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 36.0 | 3.50e-01 | 73.3% | 93.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978072 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.71 | 38.0 | 4.39e-01 | 76.0% | 70.0% |
| 3241023 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 35.0 | 2.39e-01 | 75.3% | 14.3% |
| 4943626 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.65 | 36.0 | 3.95e-01 | 79.5% | 65.0% |
| 3262206 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.65 | 53.0 | 5.11e-01 | 98.6% | 77.5% |
| 5039727 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.63 | 39.0 | 3.42e-01 | 71.9% | 42.1% |
| 4929073 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.61 | 33.0 | 3.20e-01 | 80.1% | 44.1% |
| 4018556 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.60 | 53.0 | 5.13e-01 | 99.3% | 85.0% |
| 4995515 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.60 | 36.0 | 3.19e-01 | 78.8% | 41.4% |
| 5079051 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.59 | 38.0 | 4.13e-01 | 78.8% | 78.3% |
| 3786132 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.59 | 45.0 | 4.60e-01 | 92.5% | 80.7% |
| 3971508 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.59 | 34.0 | 3.10e-01 | 79.5% | 42.6% |
| 3255190 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 32.0 | 3.79e-01 | 76.0% | 80.2% |
| 6400 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.55 | 34.0 | 3.74e-01 | 85.6% | 74.6% |
| 4938058 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.55 | 42.0 | 3.93e-01 | 79.5% | 90.7% |
| 3217508 | 243.1.1.97 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_N | 0.55 | 35.0 | 3.73e-01 | 84.9% | 72.8% |
| 4056106 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.54 | 40.0 | 3.73e-01 | 78.1% | 90.0% |
| 4987689 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.54 | 41.0 | 3.82e-01 | 79.5% | 90.6% |
| 3252847 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 29.0 | 3.69e-01 | 78.1% | 90.6% |
| 3818341 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.53 | 29.0 | 3.88e-01 | 81.5% | 100.0% |
| 4026241 | 2485.2.1.0 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain | 0.52 | 37.0 | 4.13e-01 | 71.2% | 99.1% |
| 4064677 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.52 | 43.0 | 3.81e-01 | 86.3% | 92.2% |
| 4272620 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.52 | 43.0 | 3.75e-01 | 87.0% | 90.7% |
| 4464528 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 32.0 | 3.67e-01 | 83.6% | 83.5% |
| 3177367 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.50 | 40.0 | 4.00e-01 | 92.5% | 81.3% |
D2
high
residues 287-331
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.73 | 45.0 | 3.47e-01 | 71.1% | 29.2% |
| 1tafB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.72 | 49.0 | 4.15e-01 | 71.1% | 48.6% |
| 4n1vA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.68 | 47.0 | 3.64e-01 | 91.1% | 35.5% |
| 3go5A04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 44.0 | 3.90e-01 | 86.7% | 47.6% |
| 1zbuB01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.63 | 48.0 | 4.11e-01 | 84.4% | 56.8% |
| 1ornA01 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.63 | 43.0 | 3.15e-01 | 82.2% | 28.6% |
| 3ragB00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.62 | 54.0 | 3.46e-01 | 100.0% | 91.6% |
| 2ap1A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 42.0 | 2.94e-01 | 77.8% | 56.0% |
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.60 | 53.0 | 3.44e-01 | 100.0% | 42.4% |
| 7cluA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 41.0 | 2.65e-01 | 75.6% | 41.7% |
| 5nckA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 44.0 | 2.99e-01 | 86.7% | 38.7% |
| 1dxrL02 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.58 | 47.0 | 3.67e-01 | 95.6% | 47.2% |
| 1x47A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 43.0 | 3.48e-01 | 82.2% | 51.7% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.56 | 44.0 | 3.09e-01 | 82.2% | 38.4% |
| 1af7A01 | 1.10.155.10 | Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0.55 | 42.0 | 3.68e-01 | 93.3% | 71.2% |
| 3t6pA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.54 | 48.0 | 4.22e-01 | 100.0% | 80.3% |
| 3tw6A06 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 37.0 | 3.65e-01 | 80.0% | 77.8% |
| 3h11A00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 46.0 | 2.96e-01 | 100.0% | 85.4% |
| 3u0jA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.52 | 40.0 | 2.66e-01 | 91.1% | 33.6% |
| 3bg5B07 | 1.10.10.2790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 41.0 | 4.13e-01 | 93.3% | 95.7% |
| 2ra1A01 | 1.20.58.790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 42.0 | 3.24e-01 | 100.0% | 41.8% |
| 4rflA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.50 | 39.0 | 2.65e-01 | 93.3% | 46.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3795168 | 2007.1.6.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › ELFV_dehydrog_N | 0.75 | 63.0 | 3.96e-01 | 100.0% | 18.7% |
| 4274974 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.73 | 45.0 | 3.44e-01 | 71.1% | 28.0% |
| 3740452 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.73 | 50.0 | 4.18e-01 | 71.1% | 47.9% |
| 3925064 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.72 | 49.0 | 4.07e-01 | 71.1% | 45.3% |
| 3824693 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.64 | 42.0 | 2.64e-01 | 88.9% | 12.7% |
| 5046289 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.64 | 47.0 | 3.29e-01 | 77.8% | 76.2% |
| 3198979 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.63 | 44.0 | 3.99e-01 | 80.0% | 55.0% |
| 4979200 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 43.0 | 4.26e-01 | 75.6% | 80.0% |
| 3620979 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 40.0 | 3.74e-01 | 75.6% | 56.4% |
| 3898389 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 50.0 | 3.84e-01 | 97.8% | 65.7% |
| 3646451 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.58 | 47.0 | 3.45e-01 | 93.3% | 33.3% |
| 5082110 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 40.0 | 3.69e-01 | 73.3% | 71.7% |
| 4274627 | 101.1.1.266 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut | 0.58 | 38.0 | 3.54e-01 | 97.8% | 50.0% |
| 5071624 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.58 | 47.0 | 2.76e-01 | 91.1% | 54.3% |
| 5070662 | 187.1.1.2 ↗ | alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_9 | 0.56 | 43.0 | 3.19e-01 | 88.9% | 48.1% |
| 4977905 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 3.49e-01 | 75.6% | 55.7% |
| 4970543 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 45.0 | 3.87e-01 | 97.8% | 68.0% |
| 3483255 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.53 | 37.0 | 2.99e-01 | 80.0% | 40.0% |
| 4633797 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.52 | 40.0 | 3.43e-01 | 91.1% | 77.5% |
| 4066538 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.51 | 41.0 | 3.35e-01 | 86.7% | 51.8% |
| 3940471 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 3.34e-01 | 91.1% | 60.0% |
| 5017698 | 101.1.1.187 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 | 0.50 | 40.0 | 3.59e-01 | 88.9% | 98.5% |