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IMGVR_UViG_3300026311_000260-3300026311-Ga0209723_10184088

Arc-Vir

IMGVR_UViG_3300026311_000260-3300026311-Ga0209723_10184088

Identity

Kingdom:
archaea

Quality

92.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-84
PDB
Domain cluster: rep: IMGVR_UViG_3300029775_000005-3300029775-Ga0134843_100058419__D6-68
D2 high residues 95-169
PDB
Domain cluster: rep: NC_049498.1__YP_009887297.1__HYQ28_gp31__00031__D90-184
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04865.20 best Baseplate_J 62.6 5.60e-17 97.3% 90.0%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.73 52.0 4.84e-01 89.3% 60.2%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.72 54.0 5.47e-01 89.3% 81.3%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.71 59.0 5.71e-01 100.0% 80.2%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.70 58.0 5.79e-01 100.0% 88.5%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 48.0 4.59e-01 89.3% 62.2%
1f60A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 61.0 5.40e-01 100.0% 91.7%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 55.0 4.81e-01 90.7% 92.7%
1zunB03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 55.0 5.02e-01 100.0% 90.6%
2vtwA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.63 50.0 3.72e-01 88.0% 80.5%
1cyyA02 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.61 42.0 3.59e-01 70.7% 91.2%
1bu8A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.59 49.0 4.52e-01 100.0% 69.8%
1j8rA00 2.60.40.1370 Mainly Beta › Sandwich › Immunoglobulin-like › Bacterial adhesin receptor binding domain 0.58 50.0 3.78e-01 100.0% 83.7%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.58 45.0 3.34e-01 88.0% 94.5%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 45.0 3.73e-01 88.0% 67.8%
3ihmA02 3.30.9.40 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.57 49.0 4.03e-01 100.0% 65.3%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.57 46.0 3.86e-01 93.3% 52.2%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 45.0 3.73e-01 86.7% 86.6%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 3.87e-01 85.3% 76.2%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 39.0 3.13e-01 74.7% 38.3%
3fmwC02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 4.19e-01 100.0% 83.3%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.20e-01 81.3% 94.1%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 40.0 3.19e-01 81.3% 85.1%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.27e-01 81.3% 98.5%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.15e-01 81.3% 97.1%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.04e-01 81.3% 93.2%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.76e-01 100.0% 59.4%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 43.0 3.42e-01 98.7% 60.1%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.94e-01 81.3% 87.8%
3b1bA01 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.52 39.0 2.69e-01 84.0% 56.9%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.89e-01 85.3% 93.9%
5f8zA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 39.0 3.51e-01 84.0% 57.1%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 43.0 3.83e-01 97.3% 76.7%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.52 37.0 3.83e-01 84.0% 79.5%
4bq2D01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 42.0 3.28e-01 96.0% 58.7%
6asoH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.62e-01 77.3% 72.3%
2qruA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 2.72e-01 84.0% 33.5%
2xqxA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 3.38e-01 93.3% 70.1%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.50 41.0 3.87e-01 90.7% 74.7%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957576 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.96 93.0 8.39e-01 100.0% 89.5%
3946545 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.94 90.0 8.56e-01 100.0% 88.2%
4514735 1049.2.1.4 ↗ alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J 0.91 86.0 6.17e-01 100.0% 40.5%
3947742 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.91 85.0 8.09e-01 100.0% 87.1%
3977754 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.91 85.0 7.77e-01 100.0% 87.4%
4580145 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.89 83.0 7.89e-01 100.0% 90.6%
5004552 1.16.1.0 ↗ beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I 0.82 76.0 7.46e-01 100.0% 91.3%
5070852 1.1.8.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › ARPP-1 0.77 61.0 5.47e-01 88.0% 61.9%
3950646 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.71 60.0 5.79e-01 100.0% 82.4%
4999166 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 53.0 5.32e-01 88.0% 80.0%
5073223 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 54.0 5.22e-01 90.7% 72.9%
3600462 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 54.0 5.37e-01 92.0% 78.8%
3950185 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.69 59.0 5.59e-01 100.0% 78.9%
5034375 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.69 57.0 5.40e-01 100.0% 76.7%
3792511 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.69 58.0 3.70e-01 92.0% 32.1%
5046975 1.1.7.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.69 53.0 5.23e-01 92.0% 78.8%
5076600 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.68 57.0 5.42e-01 100.0% 77.8%
4948145 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 57.0 5.43e-01 100.0% 78.9%
3480049 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 56.0 3.58e-01 90.7% 31.1%
3648952 1.1.7.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.65 52.0 4.67e-01 86.7% 68.6%
4988964 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.65 57.0 5.49e-01 100.0% 95.3%
4796695 223.1.1.11 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.63 43.0 3.84e-01 70.7% 90.7%
199058 5092.1.1.5 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD 0.63 50.0 3.72e-01 88.0% 80.5%
4300564 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.62 40.0 3.53e-01 84.0% 43.5%
4644809 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.61 49.0 4.33e-01 90.7% 59.1%
3805388 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 47.0 4.03e-01 89.3% 78.5%
4136946 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 40.0 3.21e-01 72.0% 91.0%
4191459 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 40.0 3.45e-01 72.0% 95.0%
4957580 10.29.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins 0.57 48.0 4.12e-01 98.7% 80.0%
3239418 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.14e-01 85.3% 83.0%
5055120 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.55 39.0 3.41e-01 74.7% 95.7%
3805000 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 44.0 3.23e-01 100.0% 35.5%
3937610 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 38.0 3.32e-01 78.7% 98.4%
4390138 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 44.0 3.87e-01 100.0% 70.0%
5083578 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.52 43.0 4.12e-01 100.0% 80.0%
4619601 10.32.1.48 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.52 43.0 3.78e-01 100.0% 65.6%
4336471 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 35.0 3.27e-01 72.0% 94.0%
3509389 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 44.0 3.76e-01 100.0% 84.6%
1098409 10.32.1.167 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Agarase_CBM 0.51 42.0 3.24e-01 97.3% 59.5%
2429645 10.32.1.167 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Agarase_CBM 0.51 42.0 3.28e-01 96.0% 61.0%
4960811 11.14.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.51 45.0 4.22e-01 100.0% 96.8%
3951048 331.4.1.17 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › ResB 0.51 43.0 3.75e-01 97.3% 81.7%
4876572 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.51 39.0 3.75e-01 85.3% 92.0%
3879119 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.51 43.0 3.89e-01 100.0% 70.0%
5038595 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 41.0 3.54e-01 100.0% 67.1%
3214659 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.50 43.0 3.73e-01 100.0% 61.6%
3286115 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.50 42.0 3.76e-01 100.0% 93.0%