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IMGVR_UViG_3300026365_000036-3300026365-Ga0255360_10010947
Arc-VirIMGVR_UViG_3300026365_000036-3300026365-Ga0255360_10010947
Identity
- Kingdom:
- archaea
Quality
65.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-70
Domain cluster:
rep: IMGVR_UViG_3300051219_000016-3300051219-Ga0496795_00535_3_227__D18-73
D2
high
residues 137-201
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.76 | 55.0 | 5.53e-01 | 76.9% | 89.4% |
| 2bl2A00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.76 | 65.0 | 4.89e-01 | 95.4% | 92.3% |
| 4al0A00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.75 | 66.0 | 5.10e-01 | 100.0% | 89.0% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.74 | 53.0 | 5.01e-01 | 76.9% | 87.5% |
| 2c0uA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.74 | 53.0 | 3.93e-01 | 76.9% | 56.2% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.73 | 55.0 | 4.50e-01 | 80.0% | 75.4% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 64.0 | 5.47e-01 | 100.0% | 83.3% |
| 2q7rB00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.73 | 63.0 | 4.91e-01 | 100.0% | 78.9% |
| 5tkyA05 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.71 | 52.0 | 4.71e-01 | 78.5% | 67.8% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.68 | 49.0 | 4.00e-01 | 76.9% | 69.4% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.67 | 47.0 | 3.75e-01 | 73.8% | 66.9% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 48.0 | 4.20e-01 | 78.5% | 84.5% |
| 1k1wA01 | 3.20.110.20 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › | 0.66 | 58.0 | 3.59e-01 | 96.9% | 75.0% |
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.66 | 58.0 | 5.24e-01 | 100.0% | 82.6% |
| 2k9lA00 | 1.10.10.1330 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain | 0.66 | 45.0 | 4.28e-01 | 100.0% | 60.5% |
| 4nleA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.65 | 46.0 | 4.45e-01 | 75.4% | 81.6% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.63 | 47.0 | 4.50e-01 | 84.6% | 68.0% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.63 | 47.0 | 3.91e-01 | 81.5% | 63.0% |
| 3gn4A00 | 6.10.220.10 | Special › Helix non-globular › Helical scaffold and wing domains of SecA › | 0.63 | 47.0 | 3.82e-01 | 81.5% | 46.5% |
| 1bgvA03 | 1.10.285.10 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Glutamate Dehydrogenase, chain A, domain 3 | 0.63 | 54.0 | 5.11e-01 | 100.0% | 80.3% |
| 4aqnA02 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.62 | 53.0 | 3.86e-01 | 98.5% | 33.7% |
| 3mesA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.62 | 43.0 | 2.89e-01 | 75.4% | 62.7% |
| 3l9vC00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 50.0 | 3.75e-01 | 96.9% | 51.9% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.60 | 43.0 | 3.64e-01 | 80.0% | 52.0% |
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.58 | 42.0 | 3.49e-01 | 76.9% | 79.0% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 40.0 | 3.87e-01 | 75.4% | 83.3% |
| 5u1aL00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 49.0 | 3.70e-01 | 96.9% | 68.7% |
| 3pltA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.57 | 48.0 | 3.41e-01 | 96.9% | 83.6% |
| 6h5hA00 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.57 | 45.0 | 4.41e-01 | 93.8% | 78.9% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 48.0 | 4.31e-01 | 100.0% | 99.0% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.56 | 39.0 | 4.04e-01 | 75.4% | 80.3% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 35.0 | 3.56e-01 | 81.5% | 65.2% |
| 2kp7A01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.54 | 37.0 | 3.65e-01 | 73.8% | 83.8% |
| 3a9fA01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.54 | 37.0 | 3.72e-01 | 75.4% | 70.6% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 38.0 | 3.26e-01 | 78.5% | 49.1% |
| 3fm9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 37.0 | 3.57e-01 | 78.5% | 75.6% |
| 1jalA03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.52 | 35.0 | 3.34e-01 | 72.3% | 72.8% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.51 | 41.0 | 4.12e-01 | 96.9% | 92.5% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.50 | 39.0 | 3.49e-01 | 90.8% | 77.7% |
| 3p8cD02 | 6.10.280.150 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 37.0 | 2.93e-01 | 80.0% | 50.4% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3386254 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 57.0 | 5.22e-01 | 78.5% | 61.2% |
| 3916776 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.77 | 56.0 | 4.78e-01 | 76.9% | 62.9% |
| 3835699 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.76 | 67.0 | 5.16e-01 | 100.0% | 86.0% |
| 4988447 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.76 | 56.0 | 4.63e-01 | 78.5% | 84.3% |
| 5018554 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.74 | 54.0 | 4.66e-01 | 76.9% | 93.0% |
| 3732253 | 5001.1.1.85 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin | 0.72 | 54.0 | 3.52e-01 | 80.0% | 93.3% |
| 4561291 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.71 | 50.0 | 4.32e-01 | 75.4% | 83.8% |
| 3685798 | 632.25.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor N-terminal domain › GBS CAMP factor N-terminal domain | 0.71 | 61.0 | 4.54e-01 | 98.5% | 82.9% |
| 3185507 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.71 | 52.0 | 4.85e-01 | 78.5% | 86.3% |
| 3209446 | 632.22.1.131 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › SOG2 | 0.70 | 51.0 | 4.06e-01 | 78.5% | 65.9% |
| 3690563 | 150.1.1.81 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › SOG2 | 0.70 | 51.0 | 4.04e-01 | 78.5% | 65.9% |
| 3772121 | 632.7.1.19 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › MYO6_lever | 0.69 | 50.0 | 4.59e-01 | 80.0% | 77.8% |
| 5018556 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.69 | 50.0 | 4.19e-01 | 78.5% | 82.6% |
| 4960061 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.69 | 52.0 | 4.45e-01 | 80.0% | 97.0% |
| 3290567 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.68 | 50.0 | 4.28e-01 | 78.5% | 87.6% |
| 3353183 | 601.16.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase | 0.67 | 48.0 | 3.83e-01 | 76.9% | 77.0% |
| 3420563 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.66 | 56.0 | 4.48e-01 | 100.0% | 92.1% |
| 3441543 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.66 | 47.0 | 4.05e-01 | 78.5% | 83.6% |
| 4038171 | 4044.1.1.1 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane | 0.65 | 51.0 | 4.70e-01 | 89.2% | 81.1% |
| 3645152 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.65 | 46.0 | 4.53e-01 | 76.9% | 97.1% |
| 3725705 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 54.0 | 4.96e-01 | 100.0% | 78.9% |
| 3734644 | 5001.1.1.85 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin | 0.64 | 52.0 | 3.38e-01 | 89.2% | 46.8% |
| 3271988 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.64 | 56.0 | 5.40e-01 | 100.0% | 90.4% |
| 3419612 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 52.0 | 5.04e-01 | 100.0% | 93.3% |
| 3737217 | 103.1.1.9 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HBS1_N | 0.61 | 41.0 | 4.05e-01 | 92.3% | 64.3% |
| 3684830 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.61 | 43.0 | 3.77e-01 | 75.4% | 100.0% |
| 5058654 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.60 | 44.0 | 3.46e-01 | 81.5% | 58.1% |
| 3582053 | 601.1.2.64 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_VBS2 | 0.60 | 43.0 | 3.77e-01 | 78.5% | 79.0% |
| 3810254 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.60 | 43.0 | 3.31e-01 | 78.5% | 47.5% |
| 3272056 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.59 | 42.0 | 3.37e-01 | 78.5% | 82.7% |
| 4012236 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.59 | 48.0 | 3.80e-01 | 100.0% | 66.3% |
| 3721587 | 611.7.1.10 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Helo_like_N | 0.58 | 49.0 | 3.44e-01 | 92.3% | 81.0% |
| 3987813 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.57 | 46.0 | 4.40e-01 | 89.2% | 78.7% |
| 5047389 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 45.0 | 3.59e-01 | 86.2% | 88.5% |
| 5030728 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 42.0 | 3.34e-01 | 80.0% | 57.1% |
| 4019886 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.56 | 40.0 | 3.24e-01 | 76.9% | 72.6% |
| 4953715 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.55 | 41.0 | 3.25e-01 | 83.1% | 59.3% |
| 3563670 | 3758.1.1.54 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › ApoL | 0.52 | 44.0 | 3.96e-01 | 95.4% | 96.7% |
| 3258488 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.51 | 43.0 | 3.79e-01 | 96.9% | 78.0% |