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IMGVR_UViG_3300026368_000026-3300026368-Ga0255361_10009388

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300026368_000026-3300026368-Ga0255361_10009388 ↗
Kingdom:: archaea

Quality

74.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56

PDB

Domain cluster: representative

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1zkeA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.72	58.0	5.06e-01	88.9%	75.3%
1l8qA03	1.10.1750.10	Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain	0.70	54.0	4.36e-01	85.2%	60.7%
3fyaB00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.67	49.0	4.34e-01	90.7%	54.5%
2n6yA00	1.10.1200.10	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like	0.66	47.0	4.20e-01	77.8%	87.5%
1y9qA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.65	49.0	4.25e-01	94.4%	51.8%
2y39A00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.64	50.0	3.92e-01	83.3%	45.5%
1uajA02	1.10.1270.20	Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2	0.64	49.0	4.43e-01	98.1%	61.6%
2ykgA03	1.20.1320.30	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 ›	0.63	47.0	3.64e-01	83.3%	57.1%
2zkzC00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	53.0	4.60e-01	100.0%	97.7%
1n1fA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.61	46.0	3.39e-01	83.3%	60.8%
3fymA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.59	39.0	3.37e-01	83.3%	45.1%
3c4rA00	1.10.3600.10	Mainly Alpha › Orthogonal Bundle › uncharacterized protein encoded by cryptic prophage fold › Putative bacterial toxin ydaT	0.58	39.0	3.06e-01	70.4%	59.7%
1br0A00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	47.0	3.75e-01	94.4%	80.8%
2dpyA00	3.40.50.12240	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.58	51.0	3.02e-01	100.0%	12.8%
5ow2A00	1.10.10.930	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.57	40.0	3.71e-01	92.6%	56.2%
3fmyA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.55	37.0	3.53e-01	87.0%	57.6%
5dsgA01	1.10.530.40	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.54	38.0	3.20e-01	77.8%	59.4%
2cmpA00	1.10.10.1400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif	0.54	44.0	4.44e-01	94.4%	94.6%
1vw4801	1.10.1200.10	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like	0.53	39.0	3.67e-01	87.0%	86.3%
3tqnA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	42.0	3.83e-01	92.6%	78.1%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3610148	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.69	52.0	3.59e-01	81.5%	38.9%
3517820	4193.1.1.1 ↗	alpha arrays › RUN domain › RUN domain › RUN domain › RUN	0.67	59.0	4.01e-01	98.1%	90.8%
3989752	101.1.4.3 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3	0.67	52.0	4.63e-01	96.3%	60.0%
4008699	4168.1.1.0 ↗	alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain	0.66	47.0	4.86e-01	92.6%	80.0%
3664512	185.1.1.0 ↗	alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	0.65	51.0	4.78e-01	88.9%	73.9%
4029361	604.9.1.0 ↗	alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20	0.62	56.0	4.22e-01	100.0%	81.6%
4993857	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.61	41.0	3.68e-01	70.4%	93.8%
4934139	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.61	46.0	4.42e-01	90.7%	71.7%
4449691	101.1.6.4 ↗	alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C	0.58	39.0	3.83e-01	72.2%	90.5%
3166133	101.1.2.103 ↗	alpha arrays › HTH › HTH › winged helix domain › SelB-wing_2	0.55	49.0	4.54e-01	100.0%	85.7%
3329061	5050.1.1.2 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2	0.54	43.0	3.22e-01	90.7%	70.7%
3795109	101.1.15.1 ↗	alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS	0.53	44.0	4.63e-01	92.6%	98.0%