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IMGVR_UViG_3300026560_000002-3300026560-Ga0208282_1001964
Arc-VirIMGVR_UViG_3300026560_000002-3300026560-Ga0208282_1001964
Identity
- Kingdom:
- archaea
Quality
77.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-150
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cqiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.70 | 37.0 | 4.42e-01 | 83.2% | 73.8% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 38.0 | 4.87e-01 | 87.9% | 96.5% |
| 3tqeA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.65 | 31.0 | 4.21e-01 | 79.9% | 90.4% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.64 | 43.0 | 4.30e-01 | 94.6% | 65.2% |
| 2plgA01 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.64 | 51.0 | 5.37e-01 | 96.0% | 94.7% |
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.61 | 32.0 | 4.04e-01 | 81.2% | 84.3% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.61 | 40.0 | 4.23e-01 | 79.2% | 73.9% |
| 6ruiK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.60 | 37.0 | 4.27e-01 | 81.9% | 87.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 45.0 | 4.38e-01 | 87.9% | 89.2% |
| 6gmhK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.54 | 35.0 | 3.89e-01 | 79.2% | 82.6% |
| 1u5qA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 29.0 | 3.44e-01 | 98.7% | 80.2% |
| 3kljA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.52 | 29.0 | 3.63e-01 | 94.6% | 94.0% |
| 2x10A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 31.0 | 3.57e-01 | 79.9% | 85.1% |
| 7y8uF01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 41.0 | 3.83e-01 | 85.9% | 81.4% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.51 | 28.0 | 3.33e-01 | 73.8% | 76.4% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.76e-01 | 73.2% | 89.4% |
| 8gf5C01 | 3.30.70.470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.74e-01 | 73.8% | 81.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3209679 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.71 | 38.0 | 4.65e-01 | 75.8% | 81.1% |
| 4933794 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.70 | 39.0 | 5.10e-01 | 84.6% | 100.0% |
| 3521768 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.70 | 39.0 | 4.88e-01 | 81.2% | 90.0% |
| 3268478 | 3122.1.1.0 ↗ | a+b complex topology › MESD › MESD › MESD | 0.69 | 39.0 | 5.01e-01 | 79.2% | 97.6% |
| 3451456 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.67 | 42.0 | 5.14e-01 | 77.2% | 100.0% |
| 3286580 | 304.159.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C | 0.66 | 41.0 | 4.82e-01 | 81.9% | 91.0% |
| 3799505 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.66 | 40.0 | 4.28e-01 | 91.9% | 69.5% |
| 5045102 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.64 | 34.0 | 4.18e-01 | 84.6% | 80.0% |
| 3786805 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.62 | 40.0 | 4.49e-01 | 79.2% | 85.5% |
| 4011205 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 39.0 | 4.77e-01 | 75.8% | 100.0% |
| 3450619 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.60 | 40.0 | 4.67e-01 | 73.8% | 99.0% |
| 3998323 | 304.9.1.58 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nup35_RRM_2 | 0.60 | 32.0 | 3.62e-01 | 91.3% | 67.3% |
| 5176 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.60 | 36.0 | 4.14e-01 | 80.5% | 84.2% |
| 4055479 | 304.20.1.5 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f | 0.59 | 41.0 | 3.57e-01 | 70.5% | 74.2% |
| 4436233 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.59 | 52.0 | 4.24e-01 | 94.6% | 72.4% |
| 4026407 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 40.0 | 4.26e-01 | 89.3% | 78.5% |
| 3813809 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.58 | 38.0 | 4.46e-01 | 75.2% | 97.0% |
| 3183378 | 12.3.1.45 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2264_C | 0.56 | 49.0 | 3.97e-01 | 98.7% | 91.7% |
| 3645120 | 304.8.1.55 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_C | 0.55 | 35.0 | 4.00e-01 | 83.2% | 87.6% |
| 4098686 | 304.55.1.13 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase | 0.55 | 41.0 | 4.20e-01 | 77.2% | 98.6% |
| 4030396 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.54 | 38.0 | 4.01e-01 | 70.5% | 100.0% |
| 3591093 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 40.0 | 3.31e-01 | 83.2% | 62.5% |
| 3966547 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.51 | 29.0 | 3.38e-01 | 79.9% | 80.0% |