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IMGVR_UViG_3300026560_000002-3300026560-Ga0208282_100198
Arc-VirIMGVR_UViG_3300026560_000002-3300026560-Ga0208282_100198
Identity
- Kingdom:
- archaea
Quality
87.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-37
Domain cluster:
representative
CATH (51)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vgwA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.76 | 62.0 | 4.21e-01 | 100.0% | 25.5% |
| 2x49A02 | 3.40.5.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › FHIPEP family, domain 2 | 0.73 | 58.0 | 5.22e-01 | 91.2% | 100.0% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.72 | 57.0 | 4.84e-01 | 100.0% | 85.1% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.71 | 59.0 | 3.82e-01 | 100.0% | 26.2% |
| 1wv3A01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.69 | 58.0 | 4.51e-01 | 97.1% | 100.0% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.69 | 52.0 | 4.36e-01 | 100.0% | 79.7% |
| 6b9tF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.68 | 55.0 | 3.94e-01 | 100.0% | 31.2% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 55.0 | 3.69e-01 | 100.0% | 34.9% |
| 1wkbA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.68 | 51.0 | 3.25e-01 | 100.0% | 15.4% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 54.0 | 3.49e-01 | 100.0% | 18.5% |
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 55.0 | 3.53e-01 | 100.0% | 19.1% |
| 2j58A02 | 3.10.560.10 | Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like | 0.67 | 57.0 | 4.17e-01 | 100.0% | 44.2% |
| 3dkqA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.65 | 53.0 | 3.43e-01 | 100.0% | 18.7% |
| 4icwA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.65 | 57.0 | 3.78e-01 | 100.0% | 41.5% |
| 1xjaB00 | 2.60.120.280 | Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC | 0.64 | 51.0 | 3.45e-01 | 100.0% | 24.7% |
| 1y3tA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 53.0 | 3.49e-01 | 100.0% | 21.3% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.63 | 51.0 | 4.00e-01 | 100.0% | 60.7% |
| 1rc6A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 52.0 | 3.20e-01 | 100.0% | 14.0% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.63 | 50.0 | 3.84e-01 | 100.0% | 51.1% |
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.63 | 51.0 | 3.78e-01 | 97.1% | 52.1% |
| 2hcjB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 42.0 | 3.17e-01 | 100.0% | 25.5% |
| 3votB02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.63 | 45.0 | 2.73e-01 | 82.4% | 38.9% |
| 4gniB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 48.0 | 3.17e-01 | 91.2% | 35.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.62 | 46.0 | 3.18e-01 | 100.0% | 49.1% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 48.0 | 4.47e-01 | 94.1% | 93.6% |
| 2e9wA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 49.0 | 3.89e-01 | 100.0% | 44.0% |
| 3c6mC01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.61 | 45.0 | 4.46e-01 | 100.0% | 97.7% |
| 5ee2A00 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.61 | 48.0 | 3.47e-01 | 100.0% | 77.9% |
| 1y9qA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 50.0 | 3.76e-01 | 100.0% | 36.6% |
| 7oslA02 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.60 | 43.0 | 3.17e-01 | 76.5% | 62.0% |
| 2nydA02 | 2.20.28.300 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.60 | 50.0 | 4.78e-01 | 100.0% | 82.9% |
| 2n17A00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.60 | 46.0 | 4.13e-01 | 97.1% | 67.9% |
| 1g43A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.59 | 45.0 | 3.07e-01 | 100.0% | 36.3% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.59 | 44.0 | 4.00e-01 | 100.0% | 65.6% |
| 2rbkA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.59 | 48.0 | 3.60e-01 | 100.0% | 52.5% |
| 2pn5A08 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 50.0 | 3.53e-01 | 100.0% | 37.8% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 46.0 | 3.15e-01 | 100.0% | 34.9% |
| 2pq0A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.59 | 50.0 | 3.63e-01 | 100.0% | 52.0% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.58 | 47.0 | 4.64e-01 | 94.1% | 100.0% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.58 | 46.0 | 3.01e-01 | 88.2% | 91.1% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.58 | 49.0 | 3.11e-01 | 100.0% | 43.6% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.57 | 45.0 | 3.39e-01 | 100.0% | 52.5% |
| 1r0uA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 45.0 | 3.09e-01 | 100.0% | 84.5% |
| 3fzqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 41.0 | 3.01e-01 | 85.3% | 72.2% |
| 4q0jA03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.55 | 47.0 | 3.09e-01 | 100.0% | 52.8% |
| 3oopA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 2.58e-01 | 73.5% | 45.5% |
| 6ipaA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 41.0 | 2.76e-01 | 91.2% | 94.5% |
| 3nhqC03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.54 | 44.0 | 2.99e-01 | 100.0% | 46.2% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.54 | 45.0 | 2.99e-01 | 100.0% | 49.7% |
| 4qd4A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 41.0 | 2.44e-01 | 100.0% | 69.7% |
| 5ce8A01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.51 | 43.0 | 2.96e-01 | 100.0% | 49.6% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3781851 | 5050.1.1.32 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn | 0.82 | 66.0 | 3.99e-01 | 100.0% | 14.3% |
| 3743243 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.76 | 57.0 | 4.36e-01 | 100.0% | 34.1% |
| 3621341 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.72 | 60.0 | 4.73e-01 | 100.0% | 89.3% |
| 5039504 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.71 | 55.0 | 3.91e-01 | 97.1% | 31.2% |
| 3391377 | 11.1.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 | 0.69 | 59.0 | 3.90e-01 | 100.0% | 45.7% |
| None | — | 0.68 | 52.0 | 2.91e-01 | 100.0% | 8.3% | |
| 4186857 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.68 | 55.0 | 5.32e-01 | 100.0% | 97.5% |
| 3645247 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.67 | 53.0 | 4.18e-01 | 100.0% | 78.8% |
| 3218303 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.67 | 53.0 | 5.01e-01 | 100.0% | 80.0% |
| 3404255 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.66 | 56.0 | 5.03e-01 | 100.0% | 84.0% |
| 3413459 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.65 | 50.0 | 4.73e-01 | 100.0% | 75.5% |
| 3410496 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.65 | 52.0 | 4.83e-01 | 97.1% | 77.1% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.65 | 54.0 | 3.33e-01 | 100.0% | 31.1% |
| 3389045 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.64 | 51.0 | 4.72e-01 | 100.0% | 74.0% |
| 4928815 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 47.0 | 4.15e-01 | 100.0% | 60.0% |
| 3583261 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.63 | 49.0 | 4.26e-01 | 100.0% | 100.0% |
| 3469277 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.63 | 48.0 | 3.90e-01 | 100.0% | 77.6% |
| 3237024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 48.0 | 3.53e-01 | 100.0% | 42.5% |
| 3914736 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.62 | 47.0 | 4.07e-01 | 97.1% | 98.5% |
| 4031792 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.62 | 49.0 | 3.08e-01 | 100.0% | 24.3% |
| 3415618 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.61 | 47.0 | 4.19e-01 | 97.1% | 66.7% |
| 4268493 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.61 | 47.0 | 4.49e-01 | 100.0% | 84.4% |
| 3789608 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.61 | 45.0 | 2.79e-01 | 100.0% | 26.5% |
| 3407580 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.61 | 44.0 | 3.88e-01 | 100.0% | 51.4% |
| 3405249 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.60 | 49.0 | 4.37e-01 | 100.0% | 66.0% |
| 4940035 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 51.0 | 3.57e-01 | 100.0% | 60.9% |
| 3637401 | 4081.1.1.8 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 | 0.59 | 43.0 | 2.74e-01 | 91.2% | 23.2% |
| 4461643 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.58 | 48.0 | 4.15e-01 | 100.0% | 63.3% |
| 3723733 | 223.1.1.84 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF | 0.58 | 48.0 | 2.73e-01 | 100.0% | 19.5% |
| 3588685 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.57 | 48.0 | 3.56e-01 | 100.0% | 53.7% |
| 3264411 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 41.0 | 3.49e-01 | 100.0% | 47.5% |
| 4931618 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.51 | 38.0 | 2.55e-01 | 97.1% | 15.3% |