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IMGVR_UViG_3300026882_000009-3300026882-Ga0208313_10040713

Arc-Vir

IMGVR_UViG_3300026882_000009-3300026882-Ga0208313_10040713

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.71 47.0 5.51e-01 77.5% 100.0%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.70 50.0 4.11e-01 85.9% 42.7%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 46.0 3.96e-01 76.1% 44.4%
3eqvA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.69 48.0 3.88e-01 87.3% 38.3%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.69 56.0 4.36e-01 88.7% 55.9%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.69 54.0 4.39e-01 85.9% 47.2%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 46.0 4.16e-01 77.5% 51.6%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.68 50.0 3.36e-01 78.9% 67.4%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 51.0 4.44e-01 83.1% 80.7%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 49.0 4.88e-01 91.5% 76.0%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.65 52.0 4.31e-01 88.7% 67.4%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.65 45.0 3.54e-01 71.8% 36.9%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.65 50.0 4.17e-01 83.1% 75.4%
2vzsA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 47.0 4.15e-01 76.1% 78.2%
3f1jA00 2.70.20.40 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein 0.63 46.0 3.71e-01 77.5% 44.3%
4dooA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.63 50.0 3.90e-01 85.9% 77.9%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.62 40.0 3.66e-01 90.1% 46.1%
2rauA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 55.0 3.50e-01 98.6% 58.9%
1bcrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 46.0 3.19e-01 80.3% 44.1%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.62 51.0 3.83e-01 93.0% 81.5%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.62 48.0 4.61e-01 84.5% 96.4%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.61 49.0 3.76e-01 85.9% 76.7%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.61 38.0 3.04e-01 73.2% 30.3%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.61 49.0 3.73e-01 85.9% 59.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.39e-01 85.9% 81.0%
2vr3B02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 48.0 3.77e-01 87.3% 83.2%
3kulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 42.0 3.95e-01 74.6% 88.8%
4pl9A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.59 45.0 3.59e-01 83.1% 78.0%
7o0eA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 43.0 4.15e-01 78.9% 98.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.05e-01 81.7% 73.8%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.58 42.0 3.70e-01 77.5% 84.9%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.57 43.0 3.79e-01 80.3% 84.8%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 45.0 3.67e-01 85.9% 71.3%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.57 46.0 4.47e-01 88.7% 95.1%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 43.0 2.73e-01 80.3% 74.5%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 45.0 2.98e-01 85.9% 28.7%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 47.0 3.14e-01 91.5% 30.3%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.57 41.0 4.43e-01 80.3% 90.2%
1ivyB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 43.0 2.72e-01 87.3% 72.7%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 3.74e-01 94.4% 47.9%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 38.0 4.00e-01 78.9% 81.0%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 44.0 2.86e-01 93.0% 27.4%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 39.0 2.61e-01 77.5% 25.9%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 47.0 3.67e-01 100.0% 44.7%
4az3A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 40.0 2.81e-01 83.1% 39.4%
4rmmA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 46.0 3.77e-01 98.6% 90.4%
4yisB02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 38.0 3.27e-01 81.7% 79.4%
2wraA00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.52 40.0 3.41e-01 84.5% 96.7%
6gmhC01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.52 38.0 3.15e-01 80.3% 84.2%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 43.0 2.90e-01 95.8% 44.2%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.30e-01 87.3% 53.5%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 3.09e-01 87.3% 93.3%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 39.0 3.29e-01 87.3% 68.1%
4mb4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.58e-01 76.1% 68.4%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 3.16e-01 97.2% 83.0%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 38.0 3.19e-01 81.7% 66.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4970648 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.78 51.0 5.99e-01 76.1% 96.0%
5079755 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.75 52.0 5.81e-01 80.3% 92.7%
4994111 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.74 53.0 5.92e-01 78.9% 96.4%
164598 331.15.1.1 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 0.70 46.0 3.96e-01 76.1% 44.4%
4364336 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.70 51.0 5.66e-01 84.5% 98.2%
4028149 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.67 46.0 4.13e-01 76.1% 52.6%
3459291 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.66 48.0 3.17e-01 95.8% 17.2%
3888575 10.12.1.46 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CENP-C_C 0.66 48.0 3.92e-01 76.1% 76.8%
146266 295.1.1.8 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 0.66 49.0 4.71e-01 91.5% 67.9%
3753331 277.1.1.3 a+b two layers › PX domain › PX domain › PX domain › WHAMM-JMY_N 0.66 48.0 3.96e-01 80.3% 44.0%
4464039 327.11.2.24 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_12 0.65 46.0 3.91e-01 74.6% 75.0%
3728644 12.3.1.45 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2264_C 0.65 51.0 3.41e-01 84.5% 52.6%
4965647 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.65 48.0 4.07e-01 78.9% 78.3%
5000011 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.64 45.0 3.86e-01 73.2% 90.0%
3872071 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.64 47.0 4.13e-01 77.5% 75.2%
3739773 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 48.0 4.40e-01 81.7% 78.9%
3704403 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 46.0 4.23e-01 77.5% 73.7%
3856744 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 44.0 3.83e-01 73.2% 61.8%
3339570 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.62 49.0 3.42e-01 87.3% 65.2%
3676028 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 49.0 3.41e-01 87.3% 66.4%
3275941 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.61 46.0 3.74e-01 84.5% 59.3%
3684415 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.60 47.0 3.25e-01 84.5% 35.4%
4420266 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.60 46.0 3.69e-01 80.3% 60.0%
3698340 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.60 45.0 2.91e-01 80.3% 27.0%
5000727 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 43.0 4.62e-01 84.5% 100.0%
3454119 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.60 45.0 3.65e-01 83.1% 56.6%
3172864 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.59 51.0 3.57e-01 95.8% 64.3%
None 0.59 43.0 2.78e-01 77.5% 25.4%
3169693 5.1.4.80 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.59 52.0 3.33e-01 100.0% 54.7%
3351287 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.58 45.0 2.99e-01 84.5% 28.5%
4028509 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.58 43.0 2.83e-01 81.7% 23.6%
5022439 304.156.1.3 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › DUF5402 0.58 41.0 3.94e-01 76.1% 98.8%
4930685 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.58 41.0 3.23e-01 76.1% 75.6%
3926482 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 41.0 2.69e-01 74.6% 18.3%
3322500 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.57 50.0 3.27e-01 100.0% 72.2%
3890539 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 38.0 4.08e-01 87.3% 83.3%
4929378 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 38.0 3.30e-01 70.4% 83.5%
3796106 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 50.0 3.29e-01 100.0% 45.2%
4027797 922.1.1.1 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.56 36.0 4.05e-01 71.8% 94.0%
4944062 206.1.3.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.56 42.0 2.90e-01 78.9% 36.1%
4983413 206.1.3.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.56 42.0 2.90e-01 78.9% 55.3%
3267804 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 3.98e-01 85.9% 84.0%
5054267 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.32e-01 97.2% 54.3%
3724891 223.2.1.28 a+b three layers › Profilin-like › profilin-like › profilin-like › Afi1 0.56 43.0 3.26e-01 83.1% 65.3%
None 0.56 44.0 2.91e-01 85.9% 34.2%
3328270 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.55 47.0 3.14e-01 100.0% 90.6%
3939070 11.1.1.1173 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7757 0.55 44.0 3.76e-01 91.5% 71.2%
3823787 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.55 46.0 3.67e-01 91.5% 50.7%
3925996 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 47.0 3.16e-01 100.0% 81.6%
3173021 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 45.0 3.50e-01 93.0% 90.3%
5069207 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 42.0 3.05e-01 80.3% 50.0%
3629205 5.1.4.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.55 47.0 3.00e-01 97.2% 27.8%
3220069 5.1.4.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.54 48.0 3.03e-01 100.0% 37.8%
3831725 7579.1.1.42 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.54 41.0 2.82e-01 85.9% 63.9%
3564235 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 42.0 3.52e-01 87.3% 52.0%
5033737 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.52 44.0 3.35e-01 100.0% 48.4%
3172477 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 39.0 3.26e-01 85.9% 48.6%
None 0.51 39.0 2.75e-01 81.7% 58.2%
5038381 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.50 40.0 3.43e-01 91.5% 90.4%
4668505 206.1.3.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.50 40.0 2.77e-01 84.5% 61.7%