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IMGVR_UViG_3300026882_000044-3300026882-Ga0208313_1011172

Arc-Vir

IMGVR_UViG_3300026882_000044-3300026882-Ga0208313_1011172

Quality

93.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-77
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 4.49e-01 80.8% 66.7%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 49.0 4.38e-01 74.0% 69.0%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.68 60.0 4.38e-01 100.0% 62.1%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 58.0 4.81e-01 100.0% 87.3%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 58.0 5.01e-01 100.0% 86.2%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 58.0 4.92e-01 100.0% 86.2%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 58.0 5.13e-01 100.0% 94.3%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.65 48.0 4.29e-01 78.1% 96.1%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 49.0 4.92e-01 83.6% 87.8%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.64 53.0 3.70e-01 91.8% 28.6%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 56.0 4.68e-01 100.0% 87.9%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 53.0 3.68e-01 91.8% 27.5%
2afbB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.64 49.0 3.25e-01 100.0% 19.3%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.62 50.0 3.56e-01 91.8% 29.0%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.61 45.0 3.26e-01 82.2% 29.2%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 41.0 4.11e-01 98.6% 67.1%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.60 44.0 3.48e-01 100.0% 37.7%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 42.0 3.77e-01 74.0% 55.9%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 51.0 4.36e-01 100.0% 92.2%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 51.0 4.33e-01 100.0% 82.9%
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.59 45.0 3.46e-01 82.2% 92.9%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 43.0 3.34e-01 86.3% 35.4%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 46.0 4.55e-01 90.4% 82.9%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 47.0 3.54e-01 94.5% 56.0%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.58 44.0 3.45e-01 84.9% 37.2%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.26e-01 74.0% 44.0%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 48.0 4.03e-01 98.6% 88.1%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.53e-01 98.6% 48.0%
3d2fA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 36.0 3.37e-01 82.2% 52.7%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.23e-01 97.3% 41.5%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.69e-01 100.0% 50.4%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 42.0 3.27e-01 83.6% 73.3%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 39.0 3.30e-01 84.9% 45.6%
4hrvA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.53 42.0 3.48e-01 89.0% 79.9%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 45.0 3.10e-01 100.0% 79.7%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.11e-01 74.0% 47.3%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.52 44.0 3.54e-01 100.0% 45.8%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 37.0 3.23e-01 75.3% 95.6%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.52e-01 91.8% 51.1%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 40.0 3.31e-01 94.5% 44.4%
1im3D00 2.60.40.1200 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.43e-01 76.7% 88.4%
4ienA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 39.0 3.20e-01 86.3% 92.9%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 37.0 3.48e-01 100.0% 62.9%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.74e-01 91.8% 85.6%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.94e-01 89.0% 62.0%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.20e-01 98.6% 45.9%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.21e-01 87.7% 51.4%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 44.0 3.79e-01 98.6% 67.5%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4305567 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.75 57.0 4.63e-01 87.7% 43.7%
3976963 7503.1.1.18 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF30449 0.72 55.0 4.50e-01 86.3% 45.4%
4305762 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.72 54.0 4.36e-01 86.3% 42.1%
4945290 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 51.0 5.53e-01 82.2% 98.3%
4012805 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.68 60.0 4.96e-01 100.0% 82.3%
3643907 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.68 60.0 4.69e-01 100.0% 66.9%
3449744 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.68 46.0 4.33e-01 71.2% 85.6%
3639782 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.67 59.0 4.93e-01 100.0% 83.1%
3372466 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 51.0 5.07e-01 87.7% 80.0%
3274094 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.67 51.0 4.01e-01 90.4% 38.7%
3928228 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.67 55.0 3.86e-01 91.8% 28.3%
1930750 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.67 58.0 4.62e-01 100.0% 73.5%
3513396 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 59.0 4.45e-01 100.0% 68.3%
3819893 5.1.4.288 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.66 48.0 2.93e-01 76.7% 94.3%
4623130 7503.1.1.18 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF30449 0.66 49.0 4.02e-01 83.6% 43.0%
3411385 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 52.0 3.88e-01 93.2% 34.1%
3564807 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 58.0 4.56e-01 100.0% 71.0%
3451695 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 51.0 4.81e-01 87.7% 78.9%
3744517 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 57.0 4.88e-01 100.0% 85.0%
3396868 223.2.1.46 a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M 0.64 52.0 4.23e-01 89.0% 100.0%
3894481 277.1.1.5 a+b two layers › PX domain › PX domain › PX domain › Vps5 0.64 55.0 3.58e-01 100.0% 32.4%
4108520 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.63 48.0 4.06e-01 89.0% 45.9%
3988130 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.63 43.0 3.61e-01 71.2% 98.4%
3958207 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 49.0 3.96e-01 87.7% 43.6%
3924626 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.63 47.0 4.57e-01 86.3% 71.8%
4373226 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.61 45.0 3.31e-01 86.3% 30.3%
4456410 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.61 46.0 3.27e-01 82.2% 29.0%
3960071 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.61 45.0 3.34e-01 91.8% 28.7%
3742583 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.60 45.0 3.18e-01 100.0% 24.6%
4078209 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.60 48.0 3.91e-01 89.0% 88.3%
3841771 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 53.0 4.23e-01 100.0% 72.7%
3958247 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 44.0 3.20e-01 91.8% 25.6%
4371406 2484.1.1.55 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.60 47.0 3.64e-01 91.8% 37.1%
4631411 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.59 44.0 3.40e-01 86.3% 36.1%
3927366 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.59 47.0 3.78e-01 89.0% 42.7%
3406119 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.59 43.0 3.81e-01 78.1% 60.0%
5065450 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 50.0 4.04e-01 100.0% 52.9%
5042182 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.59 44.0 4.01e-01 80.8% 74.0%
3962549 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 43.0 3.50e-01 91.8% 39.3%
3410348 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.07e-01 90.4% 75.0%
5030584 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 42.0 3.46e-01 86.3% 40.7%
3625247 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 45.0 4.07e-01 89.0% 65.5%
4989642 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.58 50.0 3.32e-01 100.0% 31.4%
4940119 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 46.0 3.73e-01 91.8% 43.2%
3506831 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.57 39.0 3.79e-01 74.0% 65.0%
5058622 5.1.9.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain in ABC toxin B component 0.56 40.0 2.88e-01 79.5% 32.8%
3616990 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 3.87e-01 87.7% 85.5%
4951451 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 42.0 3.47e-01 100.0% 42.8%
5058112 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.55 43.0 3.54e-01 91.8% 43.9%
3920557 4210.1.1.3 a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.55 44.0 4.03e-01 86.3% 75.8%
145125 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.54 39.0 3.23e-01 97.3% 41.5%
5035305 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 41.0 3.99e-01 100.0% 75.0%
4938611 295.1.1.53 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 0.53 40.0 4.30e-01 90.4% 92.2%
4142339 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.53 39.0 3.23e-01 80.8% 50.0%
5074714 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.52 37.0 3.32e-01 86.3% 51.4%
3273247 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 40.0 3.18e-01 100.0% 40.0%
5071733 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.52 35.0 3.31e-01 71.2% 56.7%
3474976 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.52 40.0 3.45e-01 87.7% 49.2%
4013174 243.1.1.83 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26061 0.52 41.0 3.16e-01 98.6% 35.1%
4932428 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.52 38.0 3.86e-01 82.2% 82.9%
3492201 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.52 31.0 3.15e-01 74.0% 57.3%
4375028 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 43.0 3.70e-01 95.9% 59.2%
3903091 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.52 45.0 2.87e-01 100.0% 29.5%
5073891 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 40.0 3.63e-01 83.6% 98.0%
4030365 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 42.0 3.76e-01 91.8% 83.8%
3721174 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.51 44.0 3.60e-01 100.0% 79.3%