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IMGVR_UViG_3300026882_000104-3300026882-Ga0208313_10007923

Arc-Vir

IMGVR_UViG_3300026882_000104-3300026882-Ga0208313_10007923

Identity

Kingdom:
archaea

Quality

76.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-77
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ldjA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.70 59.0 5.03e-01 97.3% 56.9%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.70 60.0 5.43e-01 94.7% 81.2%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.69 48.0 3.27e-01 73.3% 42.2%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.67 56.0 5.27e-01 94.7% 75.5%
2hytA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 57.0 4.24e-01 100.0% 54.4%
4cb8A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 53.0 3.22e-01 96.0% 20.5%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 48.0 3.89e-01 89.3% 63.2%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.59 44.0 3.72e-01 85.3% 46.9%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.59 50.0 3.95e-01 97.3% 76.4%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 49.0 4.15e-01 97.3% 88.1%
3e98B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 51.0 3.86e-01 97.3% 78.7%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.57 48.0 4.18e-01 97.3% 85.5%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.55 42.0 4.05e-01 82.7% 95.5%
2qyuA02 1.25.40.300 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein 0.54 46.0 3.44e-01 96.0% 36.9%
3ppuB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 46.0 4.11e-01 100.0% 77.0%
4jrrB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 35.0 2.73e-01 89.3% 29.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3404270 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.80 57.0 4.69e-01 74.7% 93.8%
3931081 304.57.1.1 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.76 56.0 4.51e-01 77.3% 62.2%
3722050 197.1.1.0 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.72 64.0 5.64e-01 100.0% 70.9%
5070905 109.3.1.476 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Proton_antipo_M 0.71 62.0 4.16e-01 96.0% 26.3%
3623255 7023.1.1.0 ↗ alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.70 54.0 4.86e-01 84.0% 100.0%
3733140 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 50.0 3.98e-01 77.3% 38.7%
4597634 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.68 47.0 4.62e-01 73.3% 66.3%
3963130 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.68 52.0 4.11e-01 85.3% 40.0%
3697355 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.67 49.0 3.89e-01 77.3% 38.7%
4025205 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.65 57.0 4.62e-01 100.0% 82.0%
4000385 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.64 56.0 3.83e-01 97.3% 93.7%
3212799 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.62 45.0 4.31e-01 74.7% 75.3%
3236284 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 49.0 4.89e-01 89.3% 88.7%
3884035 611.2.1.0 ↗ alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) 0.60 47.0 3.99e-01 85.3% 88.8%
4093115 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.57 48.0 3.52e-01 100.0% 39.6%
3465959 601.19.1.28 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › V_ATPase_I 0.57 51.0 3.27e-01 98.7% 29.7%
3987389 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.57 43.0 2.62e-01 81.3% 12.3%
3955636 604.12.1.106 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF28475 0.56 47.0 4.77e-01 94.7% 92.0%
3309441 547.1.1.0 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain 0.51 41.0 3.88e-01 86.7% 84.4%