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IMGVR_UViG_3300026882_000104-3300026882-Ga0208313_10007925
Arc-VirIMGVR_UViG_3300026882_000104-3300026882-Ga0208313_10007925
Identity
- Kingdom:
- archaea
Quality
86.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-105
Domain cluster:
representative
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3993350 | 630.1.1.1 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind | 0.61 | 41.0 | 3.33e-01 | 71.4% | 80.7% |
| 4240399 | 2003.1.3.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2, NAD_binding_8 | 0.51 | 45.0 | 3.27e-01 | 100.0% | 93.7% |
| 4359950 | 213.1.1.99 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PF29820 | 0.51 | 36.0 | 2.79e-01 | 77.1% | 94.2% |
D2
high
residues 265-340
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mrzB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.63 | 41.0 | 3.58e-01 | 100.0% | 45.5% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.57 | 40.0 | 3.81e-01 | 100.0% | 61.8% |
| 7mhuA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.56 | 47.0 | 3.06e-01 | 94.7% | 20.1% |
| 3pgbA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 47.0 | 4.15e-01 | 96.1% | 80.0% |
| 3dmcA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 47.0 | 3.95e-01 | 98.7% | 64.9% |
| 1of5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 46.0 | 3.75e-01 | 98.7% | 61.0% |
| 2y9mA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 37.0 | 2.94e-01 | 82.9% | 33.7% |
| 3gdiA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 47.0 | 4.16e-01 | 100.0% | 90.1% |
| 1kyfA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.52 | 39.0 | 3.47e-01 | 81.6% | 86.7% |
| 4h3uA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 44.0 | 3.77e-01 | 100.0% | 66.9% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.51 | 38.0 | 3.18e-01 | 93.4% | 44.3% |
| 7xlqD01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 44.0 | 3.76e-01 | 98.7% | 82.2% |
| 7rlrA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 42.0 | 3.12e-01 | 100.0% | 94.2% |
| 1zuoB00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.50 | 38.0 | 3.24e-01 | 85.5% | 47.9% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.50 | 45.0 | 4.11e-01 | 100.0% | 85.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3368463 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.62 | 43.0 | 3.56e-01 | 100.0% | 42.3% |
| 3511079 | 708.1.2.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP | 0.59 | 51.0 | 4.24e-01 | 100.0% | 79.3% |
| 3636802 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.57 | 44.0 | 4.16e-01 | 85.5% | 76.8% |
| 3614925 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.55 | 47.0 | 3.10e-01 | 94.7% | 52.2% |
| 3412626 | 223.1.1.108 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 | 0.53 | 47.0 | 2.88e-01 | 100.0% | 42.9% |
| 5047353 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.53 | 47.0 | 3.99e-01 | 100.0% | 81.6% |
| 3985160 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 47.0 | 4.09e-01 | 100.0% | 85.2% |
| 3489060 | 223.1.1.98 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 | 0.52 | 45.0 | 4.02e-01 | 97.4% | 92.7% |
| 3766518 | 60.1.2.4 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › PF29334 | 0.52 | 44.0 | 3.30e-01 | 94.7% | 58.4% |
| 3940047 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 45.0 | 3.65e-01 | 100.0% | 77.3% |
| 3579707 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.51 | 43.0 | 4.18e-01 | 100.0% | 97.8% |
| 4963925 | 3488.1.1.5 ↗ | a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Cache_3-Cache_2 | 0.51 | 45.0 | 3.45e-01 | 100.0% | 58.3% |
| 4945458 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 33.0 | 3.07e-01 | 72.4% | 52.0% |
| 3300719 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.50 | 42.0 | 3.65e-01 | 93.4% | 78.3% |
| 6336 | 331.13.1.1 ↗ | a+b two layers › TBP-like › YwmB-like › YwmB-like › DUF1779 | 0.50 | 38.0 | 2.80e-01 | 93.4% | 30.2% |
| 3673183 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.50 | 39.0 | 3.14e-01 | 84.2% | 46.5% |
D3
medium
residues 106-162
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8ab6B02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.71 | 42.0 | 2.84e-01 | 70.2% | 18.4% |
D4
medium
residues 163-264
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 47.0 | 3.85e-01 | 75.5% | 52.7% |
| 1ek9A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.65 | 52.0 | 3.41e-01 | 84.3% | 84.1% |
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.65 | 54.0 | 3.44e-01 | 88.2% | 78.2% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 50.0 | 3.57e-01 | 85.3% | 49.8% |
| 5mgyA00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.54 | 46.0 | 3.27e-01 | 93.1% | 44.3% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3267835 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.74 | 37.0 | 3.72e-01 | 74.5% | 48.6% |
| 5037750 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.72 | 50.0 | 4.01e-01 | 71.6% | 49.7% |
| 4933528 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.72 | 50.0 | 3.92e-01 | 71.6% | 45.2% |
| 3838659 | 5085.1.1.0 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.69 | 56.0 | 3.65e-01 | 84.3% | 90.0% |
| 3985268 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.69 | 49.0 | 3.60e-01 | 72.5% | 56.5% |
| 3265334 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.66 | 29.0 | 2.90e-01 | 73.5% | 38.2% |
| 3921728 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.66 | 43.0 | 4.15e-01 | 76.5% | 59.1% |
| 3981414 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.66 | 54.0 | 3.54e-01 | 87.3% | 88.8% |
| 156884 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.65 | 54.0 | 3.56e-01 | 88.2% | 88.3% |
| 3975665 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.65 | 53.0 | 3.44e-01 | 86.3% | 84.9% |
| 4320352 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.65 | 53.0 | 3.50e-01 | 87.3% | 85.3% |
| 4520610 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.65 | 57.0 | 3.71e-01 | 94.1% | 84.8% |
| 3585116 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.65 | 53.0 | 3.98e-01 | 86.3% | 64.7% |
| 3974092 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.65 | 54.0 | 3.51e-01 | 90.2% | 90.1% |
| 3386397 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.64 | 53.0 | 3.47e-01 | 87.3% | 90.0% |
| 4066295 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.64 | 53.0 | 3.38e-01 | 87.3% | 82.6% |
| 3949218 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.64 | 53.0 | 3.44e-01 | 88.2% | 82.0% |
| 3972938 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.64 | 51.0 | 3.33e-01 | 85.3% | 82.5% |
| 4093339 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.63 | 53.0 | 3.38e-01 | 87.3% | 82.8% |
| 3967497 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.63 | 52.0 | 3.42e-01 | 88.2% | 88.2% |
| 4304389 | 5086.1.1.119 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C | 0.63 | 53.0 | 4.17e-01 | 93.1% | 45.5% |
| 3947163 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.62 | 51.0 | 3.34e-01 | 87.3% | 80.9% |
| 3220485 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 51.0 | 3.51e-01 | 89.2% | 95.1% |
| 3181187 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.60 | 51.0 | 2.99e-01 | 89.2% | 77.1% |
| 4490186 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 48.0 | 3.30e-01 | 85.3% | 43.8% |
| 3879591 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.59 | 47.0 | 3.32e-01 | 85.3% | 46.8% |
| 3798829 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.59 | 47.0 | 3.64e-01 | 85.3% | 60.0% |
| 3214243 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.54 | 45.0 | 3.14e-01 | 92.2% | 96.2% |
| 3586391 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.51 | 46.0 | 3.28e-01 | 100.0% | 88.7% |