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IMGVR_UViG_3300026885_000015-3300026885-Ga0208662_1002662
Arc-VirIMGVR_UViG_3300026885_000015-3300026885-Ga0208662_1002662
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-84
Domain cluster:
rep: IMGVR_UViG_3300027933_000009-3300027933-Ga0208549_10051622__D2-75
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5aj3E01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.69 | 48.0 | 4.92e-01 | 72.3% | 76.5% |
| 3grdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 47.0 | 4.04e-01 | 72.3% | 73.5% |
| 2bi0A01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.68 | 49.0 | 3.93e-01 | 74.7% | 90.2% |
| 3ec9A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 47.0 | 4.03e-01 | 72.3% | 72.9% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 47.0 | 3.97e-01 | 72.3% | 68.7% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.67 | 38.0 | 4.37e-01 | 73.5% | 76.7% |
| 3omlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.66 | 45.0 | 3.09e-01 | 100.0% | 22.4% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.65 | 37.0 | 4.57e-01 | 73.5% | 95.8% |
| 6jqlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.65 | 51.0 | 3.92e-01 | 83.1% | 89.3% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 46.0 | 3.78e-01 | 73.5% | 64.1% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 54.0 | 4.29e-01 | 90.4% | 82.5% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.63 | 45.0 | 3.12e-01 | 73.5% | 28.9% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 44.0 | 3.77e-01 | 73.5% | 71.9% |
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 40.0 | 3.33e-01 | 100.0% | 37.8% |
| 4dokA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.60 | 36.0 | 2.95e-01 | 71.1% | 31.6% |
| 2rkcA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.60 | 52.0 | 3.40e-01 | 100.0% | 96.5% |
| 1wpuA00 | 3.40.1510.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hut operon positive regulatory protein HutP › Hut operon regulatory protein HutP | 0.59 | 44.0 | 3.67e-01 | 79.5% | 87.1% |
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.58 | 43.0 | 3.81e-01 | 100.0% | 52.8% |
| 6ka3A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 51.0 | 4.23e-01 | 100.0% | 78.9% |
| 5df7A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 49.0 | 3.32e-01 | 100.0% | 81.3% |
| 3p51A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 49.0 | 4.18e-01 | 100.0% | 77.2% |
| 8fkmA01 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 46.0 | 3.76e-01 | 91.6% | 51.8% |
| 2gaiA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.56 | 40.0 | 3.49e-01 | 100.0% | 49.6% |
| 2v1oB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 39.0 | 3.24e-01 | 72.3% | 71.6% |
| 4dolA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.56 | 41.0 | 3.33e-01 | 77.1% | 41.7% |
| 1kyfA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.56 | 45.0 | 4.10e-01 | 97.6% | 66.4% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.55 | 40.0 | 3.26e-01 | 75.9% | 40.9% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 43.0 | 4.15e-01 | 98.8% | 76.8% |
| 3bf2A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.54 | 42.0 | 3.75e-01 | 85.5% | 65.6% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 40.0 | 3.56e-01 | 79.5% | 58.2% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 46.0 | 3.85e-01 | 100.0% | 73.9% |
| 1xuvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 47.0 | 3.82e-01 | 100.0% | 70.6% |
| 3uoaB02 | 2.60.40.3360 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 36.0 | 3.11e-01 | 71.1% | 69.1% |
| 4l8hB00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.52 | 39.0 | 3.44e-01 | 79.5% | 61.8% |
| 4dduA07 | 2.60.510.20 | Mainly Beta › Sandwich › EV matrix protein fold › | 0.52 | 33.0 | 3.07e-01 | 71.1% | 47.7% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.52 | 45.0 | 3.86e-01 | 100.0% | 88.7% |
| 4eg9A00 | 2.50.20.40 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.52 | 43.0 | 3.16e-01 | 91.6% | 87.4% |
| 1eq6A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 45.0 | 3.48e-01 | 98.8% | 81.5% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.51 | 37.0 | 3.22e-01 | 78.3% | 50.4% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 44.0 | 3.59e-01 | 98.8% | 67.9% |
| 6jhpA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.51 | 41.0 | 2.87e-01 | 91.6% | 88.2% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 43.0 | 3.73e-01 | 100.0% | 78.7% |
| 5uj1A03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.50 | 46.0 | 3.57e-01 | 100.0% | 50.9% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 43.0 | 3.63e-01 | 98.8% | 74.3% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940126 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.68 | 47.0 | 4.06e-01 | 100.0% | 49.2% |
| 3587514 | 243.1.1.17 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC | 0.67 | 48.0 | 4.06e-01 | 73.5% | 66.9% |
| 1308671 | 222.1.1.20 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N | 0.66 | 45.0 | 3.80e-01 | 100.0% | 44.3% |
| 4031907 | 222.1.1.28 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27762 | 0.65 | 43.0 | 3.92e-01 | 100.0% | 51.8% |
| 3504606 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.65 | 45.0 | 3.13e-01 | 73.5% | 30.3% |
| 3702051 | 1116.1.1.0 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain | 0.64 | 55.0 | 4.23e-01 | 98.8% | 87.5% |
| 4185639 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.62 | 45.0 | 3.08e-01 | 77.1% | 35.7% |
| 3373981 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.62 | 43.0 | 3.18e-01 | 72.3% | 30.0% |
| 5054725 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.62 | 46.0 | 4.01e-01 | 100.0% | 53.3% |
| 3647596 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.61 | 42.0 | 3.34e-01 | 71.1% | 35.3% |
| 4093191 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.61 | 48.0 | 4.47e-01 | 97.6% | 68.3% |
| 3957635 | 222.1.1.9 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N | 0.60 | 39.0 | 3.70e-01 | 100.0% | 55.0% |
| 4085005 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.60 | 45.0 | 3.69e-01 | 79.5% | 76.0% |
| 3839186 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.59 | 52.0 | 3.47e-01 | 100.0% | 81.4% |
| 4942348 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.59 | 45.0 | 3.91e-01 | 100.0% | 53.6% |
| 3799143 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.58 | 46.0 | 4.05e-01 | 95.2% | 56.3% |
| 4936938 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.58 | 51.0 | 4.27e-01 | 100.0% | 60.0% |
| 3492330 | 5.1.4.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 | 0.57 | 51.0 | 3.34e-01 | 100.0% | 97.9% |
| 5027896 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.57 | 44.0 | 3.81e-01 | 100.0% | 54.4% |
| 4971256 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.55 | 44.0 | 3.80e-01 | 100.0% | 56.0% |
| 4958682 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.55 | 45.0 | 3.84e-01 | 100.0% | 55.4% |
| 4956579 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.54 | 48.0 | 3.84e-01 | 98.8% | 79.4% |
| 3860882 | 11.1.1.1025 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4556 | 0.54 | 41.0 | 3.86e-01 | 86.7% | 64.5% |
| 5055337 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 47.0 | 3.88e-01 | 100.0% | 88.7% |
| 3177804 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.54 | 43.0 | 3.61e-01 | 91.6% | 48.8% |
| 3517644 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.54 | 49.0 | 4.12e-01 | 98.8% | 95.6% |
| 3964568 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.53 | 46.0 | 4.64e-01 | 97.6% | 95.3% |
| 3959925 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 47.0 | 4.45e-01 | 97.6% | 92.0% |
| 3600592 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.53 | 47.0 | 3.68e-01 | 100.0% | 52.8% |
| 4108159 | 223.3.1.0 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins | 0.53 | 46.0 | 3.11e-01 | 100.0% | 48.7% |
| 4939420 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.53 | 39.0 | 3.55e-01 | 94.0% | 57.4% |
| 5013086 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.52 | 46.0 | 3.45e-01 | 100.0% | 86.0% |
| 3643800 | 813.1.1.1 ↗ | a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone | 0.52 | 37.0 | 2.73e-01 | 73.5% | 38.8% |
| 3458822 | 304.112.1.1 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoL1 | 0.52 | 41.0 | 3.57e-01 | 97.6% | 54.1% |
| 3425066 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.52 | 45.0 | 3.55e-01 | 98.8% | 61.1% |
| 3668772 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.52 | 44.0 | 3.62e-01 | 100.0% | 60.0% |
| 3464474 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 41.0 | 3.35e-01 | 100.0% | 45.8% |
| 5022394 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 38.0 | 3.42e-01 | 100.0% | 55.0% |
| 4308071 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.52 | 37.0 | 3.02e-01 | 75.9% | 77.5% |
| 3783751 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.51 | 44.0 | 3.04e-01 | 100.0% | 46.7% |
| 3781408 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.23e-01 | 91.6% | 70.6% |
| 139367 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.51 | 43.0 | 3.92e-01 | 100.0% | 86.8% |
| 4288637 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.50 | 35.0 | 2.93e-01 | 74.7% | 78.1% |
| 3651800 | 71.1.1.12 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 | 0.50 | 36.0 | 3.08e-01 | 98.8% | 44.1% |
| 4949860 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.50 | 37.0 | 3.24e-01 | 78.3% | 86.4% |