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IMGVR_UViG_3300026885_000097-3300026885-Ga0208662_1007446
Arc-VirIMGVR_UViG_3300026885_000097-3300026885-Ga0208662_1007446
Identity
- Kingdom:
- archaea
Quality
91.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-85
Domain cluster:
rep: IMGVR_UViG_3300026885_000097-3300026885-Ga0208662_1007446__D100-171
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2itmA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 43.0 | 3.03e-01 | 70.4% | 97.9% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 32.0 | 3.75e-01 | 85.2% | 71.4% |
| 2ap1A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 44.0 | 3.69e-01 | 76.5% | 95.7% |
| 4o5fA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 41.0 | 3.48e-01 | 70.4% | 100.0% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 36.0 | 3.83e-01 | 72.8% | 73.1% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 34.0 | 3.78e-01 | 81.5% | 83.3% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 31.0 | 3.20e-01 | 98.8% | 62.7% |
| 4lrzE02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 38.0 | 3.66e-01 | 80.2% | 98.9% |
| 3t69A01 | 3.30.420.300 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain | 0.51 | 34.0 | 3.59e-01 | 81.5% | 76.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2074164 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.62 | 42.0 | 2.97e-01 | 70.4% | 97.5% |
| 3602236 | 284.1.3.3 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 | 0.60 | 42.0 | 3.97e-01 | 72.8% | 78.9% |
| 3257304 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.56 | 37.0 | 3.45e-01 | 100.0% | 52.4% |
| 5031053 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.55 | 28.0 | 2.90e-01 | 91.4% | 50.0% |
| 4413471 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.55 | 36.0 | 3.72e-01 | 97.5% | 72.0% |
| 3922234 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 36.0 | 3.25e-01 | 100.0% | 48.7% |
| 4931923 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.53 | 36.0 | 3.70e-01 | 95.1% | 72.5% |
| 3815957 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.53 | 46.0 | 3.12e-01 | 100.0% | 100.0% |
| 3497026 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 39.0 | 3.12e-01 | 80.2% | 82.4% |
| 3523446 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.52 | 35.0 | 3.32e-01 | 100.0% | 57.0% |
| 4982424 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.51 | 40.0 | 2.88e-01 | 82.7% | 84.5% |
| 4238490 | 812.2.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase | 0.51 | 35.0 | 3.80e-01 | 79.0% | 86.2% |
| 4193755 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.51 | 33.0 | 3.49e-01 | 96.3% | 73.3% |
D2
high
residues 100-171
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wadA01 | 6.20.70.10 | Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › | 0.81 | 34.0 | 5.06e-01 | 91.7% | 96.7% |
| 2ap1A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.68 | 48.0 | 3.90e-01 | 75.0% | 96.4% |
| 1h7sA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.68 | 41.0 | 2.99e-01 | 79.2% | 22.3% |
| 2k7iA01 | 3.30.160.160 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like | 0.67 | 41.0 | 4.82e-01 | 100.0% | 91.7% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.67 | 49.0 | 3.20e-01 | 77.8% | 99.1% |
| 2yh9B00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.67 | 36.0 | 3.76e-01 | 90.3% | 57.4% |
| 4dm5A00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.67 | 38.0 | 3.62e-01 | 87.5% | 47.1% |
| 1rp5A01 | 2.20.70.70 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.67 | 32.0 | 4.14e-01 | 91.7% | 88.9% |
| 4qxaB00 | 2.30.29.230 | Mainly Beta › Roll › PH-domain like › | 0.60 | 44.0 | 3.55e-01 | 79.2% | 51.0% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.60 | 30.0 | 1.78e-01 | 91.7% | 5.9% |
| 1b63A01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.60 | 36.0 | 2.60e-01 | 79.2% | 19.9% |
| 2x49A02 | 3.40.5.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › FHIPEP family, domain 2 | 0.59 | 35.0 | 4.04e-01 | 94.4% | 89.6% |
| 1ykdB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.57 | 42.0 | 3.15e-01 | 79.2% | 51.3% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 33.0 | 3.64e-01 | 84.7% | 71.4% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 40.0 | 4.20e-01 | 80.6% | 84.8% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 33.0 | 3.45e-01 | 79.2% | 67.6% |
| 1orvA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 34.0 | 2.34e-01 | 100.0% | 18.6% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 35.0 | 3.59e-01 | 76.4% | 74.6% |
| 2w18A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 44.0 | 2.89e-01 | 94.4% | 23.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4297945 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.76 | 43.0 | 4.88e-01 | 98.6% | 74.5% |
| 4188237 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.74 | 42.0 | 4.77e-01 | 98.6% | 74.5% |
| 3605879 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.69 | 37.0 | 4.44e-01 | 97.2% | 82.2% |
| 5041230 | 375.13.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain | 0.68 | 40.0 | 4.73e-01 | 97.2% | 86.0% |
| 3941411 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.67 | 50.0 | 3.76e-01 | 79.2% | 55.3% |
| 4126006 | 325.1.7.14 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid | 0.64 | 43.0 | 4.56e-01 | 98.6% | 78.5% |
| 3827447 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.64 | 56.0 | 4.10e-01 | 98.6% | 89.2% |
| 4588602 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.62 | 31.0 | 3.56e-01 | 91.7% | 64.0% |
| 4014812 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.62 | 36.0 | 3.94e-01 | 100.0% | 70.0% |
| 4554426 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.61 | 30.0 | 3.35e-01 | 91.7% | 57.4% |
| 3715091 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.60 | 34.0 | 3.59e-01 | 97.2% | 61.5% |
| 3227570 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.59 | 43.0 | 3.25e-01 | 79.2% | 32.9% |
| 3961965 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.58 | 29.0 | 3.01e-01 | 90.3% | 46.2% |
| 4270966 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 44.0 | 4.40e-01 | 97.2% | 84.0% |
| 3902698 | 5.1.4.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 | 0.56 | 46.0 | 3.05e-01 | 88.9% | 25.6% |
| 3556954 | 109.4.1.69 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IKI3 | 0.55 | 46.0 | 3.01e-01 | 88.9% | 24.6% |
| 3734118 | 223.2.1.9 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N | 0.55 | 41.0 | 3.16e-01 | 80.6% | 57.8% |
| 4929550 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.54 | 34.0 | 3.53e-01 | 90.3% | 65.7% |
| 3815957 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.54 | 46.0 | 3.05e-01 | 98.6% | 99.7% |
| 4410540 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.54 | 29.0 | 2.78e-01 | 91.7% | 40.0% |
| 4862766 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 33.0 | 3.26e-01 | 97.2% | 59.7% |
| 3768027 | 109.4.1.1794 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd | 0.52 | 47.0 | 2.90e-01 | 100.0% | 20.2% |
| 3896520 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 35.0 | 3.83e-01 | 98.6% | 85.0% |
| 3609150 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 44.0 | 2.90e-01 | 100.0% | 28.2% |