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IMGVR_UViG_3300026906_000025-3300026906-Ga0208683_10029514
Arc-VirIMGVR_UViG_3300026906_000025-3300026906-Ga0208683_10029514
Identity
- Kingdom:
- archaea
Quality
67.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-46
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xi9B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.83 | 59.0 | 4.22e-01 | 76.3% | 55.1% |
| 3kioC01 | 2.40.128.680 | Mainly Beta › Beta Barrel › Lipocalin › | 0.71 | 59.0 | 4.56e-01 | 100.0% | 81.7% |
| 3pufL00 | 2.40.128.680 | Mainly Beta › Beta Barrel › Lipocalin › | 0.70 | 59.0 | 4.27e-01 | 100.0% | 63.8% |
| 5teqA01 | 3.30.470.110 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.68 | 51.0 | 3.19e-01 | 84.2% | 16.7% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.66 | 55.0 | 3.66e-01 | 100.0% | 73.4% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 49.0 | 4.72e-01 | 86.8% | 78.7% |
| 1fblA02 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.65 | 52.0 | 3.40e-01 | 100.0% | 22.0% |
| 3td9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 49.0 | 3.22e-01 | 84.2% | 25.2% |
| 3afcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 51.0 | 2.93e-01 | 100.0% | 10.2% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.63 | 48.0 | 3.44e-01 | 81.6% | 26.3% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 51.0 | 4.26e-01 | 100.0% | 73.7% |
| 4czxA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 52.0 | 3.09e-01 | 100.0% | 18.5% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 49.0 | 2.90e-01 | 100.0% | 9.7% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 43.0 | 3.02e-01 | 73.7% | 23.4% |
| 2b5lB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 49.0 | 2.90e-01 | 100.0% | 10.5% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.61 | 43.0 | 4.10e-01 | 76.3% | 60.9% |
| 1vqqA01 | 3.10.450.100 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 | 0.61 | 50.0 | 3.73e-01 | 100.0% | 89.9% |
| 4akgA12 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 45.0 | 3.37e-01 | 89.5% | 36.8% |
| 1m3qA01 | 3.30.310.40 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.61 | 43.0 | 3.45e-01 | 81.6% | 39.3% |
| 4nkbB02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 47.0 | 3.71e-01 | 89.5% | 40.0% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.60 | 47.0 | 3.54e-01 | 100.0% | 39.1% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 43.0 | 3.52e-01 | 84.2% | 65.1% |
| 2nqwA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.58 | 46.0 | 3.72e-01 | 100.0% | 78.2% |
| 1b3qA04 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.58 | 47.0 | 4.10e-01 | 97.4% | 93.7% |
| 5ixcA01 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.57 | 45.0 | 2.62e-01 | 97.4% | 44.9% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.57 | 47.0 | 3.68e-01 | 97.4% | 63.4% |
| 6jpaE00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.57 | 42.0 | 2.88e-01 | 89.5% | 18.9% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.57 | 42.0 | 3.07e-01 | 92.1% | 55.1% |
| 3s8iA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.56 | 45.0 | 3.31e-01 | 100.0% | 47.6% |
| 1dq3A02 | 3.30.160.90 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 46.0 | 3.80e-01 | 97.4% | 61.8% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.56 | 45.0 | 3.92e-01 | 92.1% | 73.3% |
| 1ni5A02 | 1.20.59.20 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › | 0.55 | 44.0 | 3.58e-01 | 100.0% | 66.3% |
| 2ra9A01 | 3.10.540.10 | Alpha Beta › Roll › duf1285 like fold › duf1285 like domain | 0.54 | 41.0 | 3.79e-01 | 86.8% | 72.2% |
| 3witA00 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.54 | 39.0 | 3.40e-01 | 76.3% | 54.7% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 39.0 | 2.95e-01 | 89.5% | 93.2% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.52 | 37.0 | 2.60e-01 | 81.6% | 27.3% |
| 6yuqA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 38.0 | 2.49e-01 | 92.1% | 26.3% |
| 1fmbA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.51 | 36.0 | 2.99e-01 | 100.0% | 78.8% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3415621 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.75 | 56.0 | 4.90e-01 | 84.2% | 58.3% |
| 1118859 | 59.1.2.1 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC | 0.74 | 64.0 | 4.32e-01 | 100.0% | 65.0% |
| 3883359 | 59.1.2.1 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC | 0.73 | 62.0 | 4.37e-01 | 100.0% | 68.0% |
| 5036758 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.70 | 60.0 | 3.60e-01 | 100.0% | 17.5% |
| 4021531 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 50.0 | 3.69e-01 | 84.2% | 29.6% |
| 3739664 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.69 | 51.0 | 4.22e-01 | 81.6% | 48.6% |
| 3993002 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.67 | 56.0 | 3.56e-01 | 100.0% | 21.4% |
| 5081581 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.67 | 55.0 | 3.48e-01 | 100.0% | 16.5% |
| 3630470 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.67 | 49.0 | 5.05e-01 | 92.1% | 82.9% |
| 3929201 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 44.0 | 4.18e-01 | 71.1% | 59.2% |
| 3822726 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.66 | 53.0 | 3.22e-01 | 100.0% | 12.5% |
| 4984519 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.66 | 54.0 | 4.57e-01 | 100.0% | 70.0% |
| 3177452 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 51.0 | 2.82e-01 | 100.0% | 6.0% |
| 3275056 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.64 | 45.0 | 2.92e-01 | 78.9% | 24.5% |
| 4032337 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.64 | 43.0 | 2.92e-01 | 73.7% | 17.6% |
| 5083698 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.64 | 45.0 | 3.95e-01 | 81.6% | 52.3% |
| 3524959 | 391.1.1.8 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWF | 0.63 | 46.0 | 4.79e-01 | 92.1% | 82.9% |
| 3445416 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.63 | 50.0 | 2.98e-01 | 100.0% | 23.9% |
| 4013625 | 3417.1.1.0 ↗ | a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain | 0.63 | 48.0 | 4.43e-01 | 100.0% | 74.6% |
| 3993647 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.62 | 50.0 | 3.03e-01 | 97.4% | 90.5% |
| 4031750 | 274.1.1.25 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF | 0.62 | 50.0 | 3.90e-01 | 100.0% | 41.4% |
| 4268790 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.62 | 51.0 | 3.58e-01 | 97.4% | 46.2% |
| 3286642 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 45.0 | 3.41e-01 | 86.8% | 49.1% |
| 3936047 | 3153.1.1.0 ↗ | a+b two layers › PipX › PipX › PipX | 0.60 | 47.0 | 4.29e-01 | 100.0% | 63.3% |
| 3219050 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 47.0 | 3.81e-01 | 89.5% | 51.2% |
| 4480144 | 129.1.1.2 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH | 0.58 | 43.0 | 3.08e-01 | 86.8% | 60.7% |
| 5051640 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.58 | 46.0 | 3.22e-01 | 97.4% | 42.8% |
| 5041484 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.58 | 45.0 | 3.25e-01 | 97.4% | 46.7% |
| 4995271 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.57 | 45.0 | 3.41e-01 | 97.4% | 51.8% |
| 4936963 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 41.0 | 3.31e-01 | 86.8% | 36.5% |
| 4992197 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.56 | 45.0 | 3.30e-01 | 92.1% | 28.0% |
| 3818974 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.56 | 47.0 | 2.80e-01 | 100.0% | 19.1% |
| 4936665 | 218.4.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain | 0.55 | 44.0 | 3.63e-01 | 100.0% | 90.6% |
| 4680303 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.53 | 40.0 | 3.80e-01 | 89.5% | 94.0% |
| 4081696 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.50 | 38.0 | 2.41e-01 | 97.4% | 26.0% |