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IMGVR_UViG_3300026906_000025-3300026906-Ga0208683_1002959
Arc-VirIMGVR_UViG_3300026906_000025-3300026906-Ga0208683_1002959
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-89
Domain cluster:
rep: NC_028883.1__YP_009206170.1__PHIMMP01_20051__00052__D2-102
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rh3A00 | 1.10.1220.190 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › VirC2, RHH domain | 0.74 | 66.0 | 5.81e-01 | 98.8% | 92.6% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.63 | 54.0 | 5.16e-01 | 100.0% | 82.3% |
| 3etvA02 | 1.20.58.2230 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Retrograde transport protein Dsl1, N-terminal domain | 0.58 | 40.0 | 2.94e-01 | 72.6% | 46.8% |
| 2xhcA01 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.58 | 41.0 | 3.98e-01 | 98.8% | 66.3% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 34.0 | 3.90e-01 | 96.4% | 84.5% |
| 6c6uN00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.57 | 43.0 | 4.10e-01 | 98.8% | 69.4% |
| 3h7hB00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.54 | 40.0 | 3.92e-01 | 98.8% | 71.6% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 3.98e-01 | 98.8% | 89.4% |
| 7qh2C03 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 4.33e-01 | 98.8% | 93.6% |
| 2kilA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.51 | 37.0 | 2.90e-01 | 76.2% | 40.3% |
| 2pffB05 | 3.30.70.2430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.89e-01 | 98.8% | 98.4% |
| 3d8pB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 37.0 | 3.09e-01 | 78.6% | 68.1% |
| 3e54A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.50 | 35.0 | 2.92e-01 | 73.8% | 71.1% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4373529 | 101.1.11.43 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › TraY | 0.76 | 69.0 | 6.51e-01 | 100.0% | 96.0% |
| 5016958 | 101.1.11.17 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF2540 | 0.69 | 57.0 | 5.79e-01 | 100.0% | 96.2% |
| 4973226 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.60 | 36.0 | 3.22e-01 | 100.0% | 41.7% |
| 2849646 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.59 | 46.0 | 3.22e-01 | 84.5% | 26.0% |
| 3272247 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.56 | 42.0 | 3.50e-01 | 86.9% | 46.2% |
| 5023725 | 3352.1.1.8 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PTPS_related | 0.55 | 42.0 | 2.75e-01 | 83.3% | 42.5% |
| 4676848 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.53 | 38.0 | 4.05e-01 | 100.0% | 85.3% |
| 3214986 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.53 | 39.0 | 4.02e-01 | 98.8% | 82.5% |
| 3924393 | 304.17.1.2 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › Spt5-NGN | 0.52 | 39.0 | 3.70e-01 | 97.6% | 67.0% |
| 3243820 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.52 | 41.0 | 2.85e-01 | 89.3% | 67.9% |
| 4978126 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.52 | 42.0 | 4.35e-01 | 98.8% | 100.0% |
| 3640563 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 36.0 | 3.80e-01 | 92.9% | 85.3% |
| 3381188 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 2.92e-01 | 86.9% | 78.0% |
| 3294223 | 304.9.1.47 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 | 0.51 | 33.0 | 3.58e-01 | 90.5% | 81.4% |
| 4989697 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.50 | 38.0 | 3.08e-01 | 83.3% | 88.9% |
| 3781528 | 327.11.2.31 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Mug60-KHD4 | 0.50 | 36.0 | 3.73e-01 | 96.4% | 81.2% |
| 3808745 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.50 | 37.0 | 3.90e-01 | 97.6% | 86.7% |
| 3229643 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.50 | 31.0 | 2.77e-01 | 78.6% | 42.5% |
| 3630462 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.50 | 32.0 | 2.75e-01 | 85.7% | 38.6% |