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IMGVR_UViG_3300026906_000158-3300026906-Ga0208683_10012216
Arc-VirIMGVR_UViG_3300026906_000158-3300026906-Ga0208683_10012216
Identity
- Kingdom:
- archaea
Quality
81.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-50
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.74 | 60.0 | 5.43e-01 | 94.0% | 76.1% |
| 2xi8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.70 | 58.0 | 5.34e-01 | 96.0% | 75.8% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.69 | 45.0 | 4.14e-01 | 98.0% | 51.5% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.69 | 56.0 | 5.02e-01 | 100.0% | 76.6% |
| 6rnzA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 55.0 | 5.13e-01 | 96.0% | 75.8% |
| 7vjmB01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 55.0 | 5.17e-01 | 100.0% | 92.2% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 51.0 | 5.27e-01 | 94.0% | 93.5% |
| 1y9qA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 52.0 | 4.60e-01 | 100.0% | 68.2% |
| 4yg1A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 51.0 | 4.68e-01 | 96.0% | 75.0% |
| 1doqA00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.64 | 48.0 | 4.37e-01 | 84.0% | 89.9% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 4.93e-01 | 100.0% | 81.0% |
| 2q0zX02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.63 | 43.0 | 4.09e-01 | 72.0% | 100.0% |
| 3hjlA03 | 1.20.5.2020 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 37.0 | 4.06e-01 | 74.0% | 73.2% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 44.0 | 4.21e-01 | 84.0% | 63.8% |
| 3sz7A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 40.0 | 2.86e-01 | 78.0% | 22.5% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 41.0 | 3.62e-01 | 80.0% | 48.0% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.60 | 40.0 | 3.87e-01 | 80.0% | 61.4% |
| 2ahoB02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.60 | 52.0 | 4.32e-01 | 100.0% | 71.4% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.59 | 46.0 | 4.16e-01 | 92.0% | 62.7% |
| 3mggA02 | 6.10.140.1580 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 40.0 | 3.40e-01 | 72.0% | 95.5% |
| 3ftdA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.59 | 50.0 | 4.68e-01 | 98.0% | 79.4% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 36.0 | 3.44e-01 | 80.0% | 54.2% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.57 | 42.0 | 3.25e-01 | 82.0% | 35.4% |
| 3h7iA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.56 | 44.0 | 3.89e-01 | 90.0% | 96.1% |
| 2dsjA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 42.0 | 3.88e-01 | 88.0% | 62.7% |
| 7qv0F01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.55 | 44.0 | 3.77e-01 | 90.0% | 63.0% |
| 1y0uA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.42e-01 | 84.0% | 48.3% |
| 2nsaA00 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.54 | 41.0 | 2.99e-01 | 100.0% | 26.9% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.53 | 42.0 | 4.04e-01 | 88.0% | 93.1% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.90e-01 | 92.0% | 65.7% |
| 4bjqA00 | 1.10.150.770 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 44.0 | 3.78e-01 | 96.0% | 71.8% |
| 1uzcA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.51 | 34.0 | 3.23e-01 | 88.0% | 53.6% |
| 1huxA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 40.0 | 3.07e-01 | 96.0% | 77.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587618 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.77 | 66.0 | 5.62e-01 | 100.0% | 65.9% |
| 4964308 | 101.1.4.94 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HVO_2718 | 0.76 | 62.0 | 5.80e-01 | 96.0% | 87.7% |
| 3286211 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.75 | 66.0 | 6.22e-01 | 100.0% | 88.3% |
| 5032962 | 103.12.1.14 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 | 0.74 | 63.0 | 5.77e-01 | 100.0% | 73.4% |
| 3972907 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.73 | 64.0 | 4.23e-01 | 100.0% | 27.0% |
| 4981960 | 103.12.1.14 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 | 0.73 | 61.0 | 5.70e-01 | 98.0% | 75.0% |
| 2809324 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.73 | 62.0 | 5.54e-01 | 98.0% | 76.7% |
| 3603989 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.72 | 63.0 | 6.32e-01 | 100.0% | 96.0% |
| 3990067 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.71 | 59.0 | 5.11e-01 | 96.0% | 62.5% |
| 4032747 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.70 | 58.0 | 5.05e-01 | 100.0% | 64.7% |
| 3971393 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.70 | 56.0 | 3.90e-01 | 98.0% | 27.2% |
| 4255639 | 102.3.1.1 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha | 0.67 | 52.0 | 4.35e-01 | 84.0% | 87.1% |
| 3434189 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 54.0 | 5.02e-01 | 100.0% | 72.3% |
| 3381368 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 57.0 | 5.23e-01 | 100.0% | 76.9% |
| 4015710 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 53.0 | 4.46e-01 | 98.0% | 58.8% |
| 3289310 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.61 | 49.0 | 4.80e-01 | 100.0% | 83.6% |
| 4303963 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.61 | 48.0 | 4.27e-01 | 90.0% | 85.3% |
| 3287744 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.61 | 49.0 | 4.64e-01 | 100.0% | 76.7% |
| 4937154 | 102.3.1.0 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain | 0.60 | 51.0 | 4.38e-01 | 100.0% | 72.9% |
| 3278934 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.59 | 50.0 | 4.82e-01 | 100.0% | 83.3% |
| 2073547 | 621.1.1.2 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 | 0.58 | 43.0 | 3.97e-01 | 80.0% | 61.5% |
| 4985449 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.58 | 41.0 | 3.49e-01 | 76.0% | 100.0% |
| 4992568 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.58 | 46.0 | 4.36e-01 | 100.0% | 73.3% |
| 3791538 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 49.0 | 3.92e-01 | 100.0% | 54.5% |
| 3796793 | 108.1.1.26 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 | 0.58 | 50.0 | 4.33e-01 | 100.0% | 75.0% |
| 3886075 | 101.1.17.16 ↗ | alpha arrays › HTH › HTH › FF domain › FF_RHG35_4th | 0.58 | 38.0 | 3.69e-01 | 100.0% | 61.8% |
| 5051582 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.56 | 46.0 | 4.33e-01 | 96.0% | 87.7% |
| 4431704 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.56 | 46.0 | 4.19e-01 | 94.0% | 80.0% |
| 3624123 | 108.1.1.101 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 | 0.56 | 49.0 | 4.39e-01 | 100.0% | 72.9% |
| 4426101 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.56 | 38.0 | 2.74e-01 | 80.0% | 21.3% |
| 3029394 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.55 | 44.0 | 4.40e-01 | 100.0% | 87.0% |
| 4100870 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.55 | 42.0 | 2.86e-01 | 100.0% | 22.0% |
| 3577884 | 210.1.3.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_2 | 0.50 | 39.0 | 2.69e-01 | 100.0% | 84.6% |