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IMGVR_UViG_3300026906_000158-3300026906-Ga0208683_10012246
Arc-VirIMGVR_UViG_3300026906_000158-3300026906-Ga0208683_10012246
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-94
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2di0A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.71 | 44.0 | 4.72e-01 | 75.0% | 76.1% |
| 4griA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.69 | 51.0 | 5.21e-01 | 78.6% | 86.8% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.66 | 51.0 | 4.66e-01 | 87.5% | 75.9% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.65 | 50.0 | 4.15e-01 | 85.7% | 86.1% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.64 | 50.0 | 4.64e-01 | 87.5% | 83.6% |
| 8g4uA02 | 3.30.70.3290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 43.0 | 3.79e-01 | 85.7% | 46.4% |
| 1tfkA00 | 3.10.450.200 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 44.0 | 3.75e-01 | 96.4% | 43.6% |
| 7cyuA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.64 | 48.0 | 4.80e-01 | 83.9% | 100.0% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.61 | 48.0 | 3.72e-01 | 92.9% | 63.2% |
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.60 | 38.0 | 3.39e-01 | 78.6% | 45.0% |
| 7r97A01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.60 | 48.0 | 3.73e-01 | 96.4% | 70.3% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.59 | 49.0 | 4.04e-01 | 92.9% | 61.8% |
| 3vaaA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 47.0 | 3.34e-01 | 87.5% | 36.4% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 41.0 | 3.56e-01 | 85.7% | 48.3% |
| 2g8lA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.57 | 40.0 | 3.93e-01 | 82.1% | 67.7% |
| 5vc7A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 43.0 | 3.87e-01 | 87.5% | 57.5% |
| 2f5jB00 | 1.10.274.30 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › MRG domain | 0.57 | 48.0 | 3.50e-01 | 96.4% | 91.2% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.56 | 40.0 | 3.92e-01 | 78.6% | 68.9% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.54 | 44.0 | 3.09e-01 | 100.0% | 31.9% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.54 | 42.0 | 4.30e-01 | 100.0% | 94.5% |
| 2r7hB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 42.0 | 3.22e-01 | 98.2% | 52.2% |
| 1sqhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 39.0 | 2.85e-01 | 82.1% | 39.2% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.51 | 38.0 | 3.48e-01 | 85.7% | 57.8% |
| 1w9cA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.51 | 43.0 | 2.72e-01 | 98.2% | 32.7% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.50 | 37.0 | 3.45e-01 | 83.9% | 62.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3297133 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.73 | 61.0 | 5.56e-01 | 94.6% | 85.3% |
| 3486206 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 56.0 | 5.12e-01 | 87.5% | 68.0% |
| 4011964 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 46.0 | 4.29e-01 | 76.8% | 54.3% |
| 3599325 | 220.1.1.92 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH | 0.69 | 58.0 | 4.32e-01 | 96.4% | 96.0% |
| 3691983 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.67 | 46.0 | 4.71e-01 | 80.4% | 74.5% |
| 3471257 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.66 | 57.0 | 4.66e-01 | 100.0% | 60.9% |
| 3878202 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.66 | 51.0 | 4.53e-01 | 87.5% | 75.3% |
| 4558420 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.65 | 51.0 | 4.69e-01 | 87.5% | 82.7% |
| 3240434 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.65 | 45.0 | 4.32e-01 | 80.4% | 63.1% |
| None | — | 0.65 | 46.0 | 3.90e-01 | 76.8% | 46.4% | |
| 3417054 | 103.1.1.85 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28528 | 0.63 | 44.0 | 4.24e-01 | 75.0% | 64.6% |
| 3977558 | 639.2.1.3 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM | 0.62 | 39.0 | 4.01e-01 | 96.4% | 65.5% |
| 3552184 | 1045.1.1.1 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Mre11_DNA_bind | 0.61 | 51.0 | 4.22e-01 | 96.4% | 89.5% |
| 5030197 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.61 | 52.0 | 3.76e-01 | 100.0% | 76.4% |
| 3410442 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.61 | 47.0 | 3.69e-01 | 85.7% | 45.6% |
| 4028394 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 51.0 | 3.95e-01 | 96.4% | 70.4% |
| 3171915 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.60 | 46.0 | 4.10e-01 | 87.5% | 74.1% |
| 3620454 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.58 | 46.0 | 3.41e-01 | 87.5% | 40.0% |
| 3216139 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.58 | 47.0 | 3.19e-01 | 89.3% | 31.9% |
| 5018431 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.57 | 47.0 | 2.97e-01 | 100.0% | 32.3% |
| 4224925 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.57 | 42.0 | 3.62e-01 | 80.4% | 82.2% |
| 4009705 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.55 | 38.0 | 3.70e-01 | 71.4% | 78.3% |
| 3527369 | 110.1.1.3 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED | 0.52 | 39.0 | 3.50e-01 | 89.3% | 74.4% |
| 4996865 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.51 | 43.0 | 4.34e-01 | 98.2% | 94.5% |