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IMGVR_UViG_3300026962_000013-3300026962-Ga0207813_100003337

Arc-Vir

IMGVR_UViG_3300026962_000013-3300026962-Ga0207813_100003337

Quality

82.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-114
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y10B02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.61 46.0 3.94e-01 79.6% 84.7%
4wp3C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.60 48.0 4.09e-01 85.8% 93.6%
7uwjC01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.55 40.0 3.91e-01 74.3% 97.5%
1t8hA00 3.60.140.10 Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases 0.53 48.0 3.63e-01 100.0% 75.4%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.51 39.0 3.27e-01 80.5% 97.9%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.50 29.0 3.59e-01 75.2% 98.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3990743 7552.1.1.1 a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.63 52.0 3.64e-01 91.2% 91.0%
3788835 4357.1.1.7 beta barrels › WWE domain › WWE domain › WWE domain › DUF7131 0.60 35.0 3.97e-01 88.5% 77.4%
3243609 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.59 33.0 3.95e-01 85.8% 82.7%
3614494 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 50.0 3.81e-01 94.7% 67.7%
4930766 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.57 46.0 4.38e-01 87.6% 76.3%
3765204 2498.5.1.0 mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.55 41.0 3.03e-01 77.9% 55.1%
3677440 862.1.1.11 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R 0.54 41.0 3.25e-01 81.4% 95.9%
3556688 288.1.1.5 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › N_Asn_amidohyd 0.54 46.0 3.45e-01 94.7% 43.8%
2526976 288.1.1.1 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.53 47.0 3.63e-01 100.0% 76.2%
3385583 288.1.1.1 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.52 47.0 3.80e-01 100.0% 80.0%
3907397 390.1.1.4 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › MANEC 0.52 34.0 3.69e-01 95.6% 78.9%
4155829 288.1.1.1 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.51 45.0 3.51e-01 100.0% 76.2%
3391934 288.1.1.5 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › N_Asn_amidohyd 0.51 46.0 3.44e-01 100.0% 40.5%
3754910 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 39.0 2.43e-01 81.4% 46.7%
3608399 862.1.1.7 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PPL5 0.51 43.0 3.47e-01 95.6% 99.1%
4296076 288.1.1.1 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.50 45.0 3.49e-01 100.0% 78.8%
3802060 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.50 39.0 3.12e-01 86.7% 93.7%
D2 high residues 120-209
PDB
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 50.0 5.90e-01 93.3% 93.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 49.0 5.64e-01 93.3% 89.4%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 48.0 5.48e-01 93.3% 87.7%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 49.0 5.33e-01 92.2% 84.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 5.45e-01 94.4% 89.9%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 47.0 4.55e-01 94.4% 60.0%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 47.0 5.22e-01 93.3% 90.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 45.0 3.96e-01 91.1% 45.1%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.97e-01 93.3% 88.0%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 40.0 4.62e-01 90.0% 98.3%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 38.0 4.37e-01 84.4% 90.3%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.60 46.0 5.06e-01 91.1% 98.6%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.60 35.0 3.93e-01 78.9% 79.4%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 44.0 2.98e-01 78.9% 26.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 36.0 4.06e-01 88.9% 88.7%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 36.0 4.17e-01 93.3% 90.3%
2f20A00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.56 42.0 3.12e-01 78.9% 99.6%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 44.0 4.23e-01 94.4% 75.5%
4ir8A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.55 44.0 3.56e-01 87.8% 71.9%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.54 32.0 3.49e-01 75.6% 71.8%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.54 44.0 4.28e-01 98.9% 78.8%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.54 40.0 3.64e-01 80.0% 84.4%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.62e-01 78.9% 85.8%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.59e-01 78.9% 90.2%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 44.0 3.02e-01 94.4% 98.3%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 41.0 3.77e-01 82.2% 89.6%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.49e-01 82.2% 89.1%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.36e-01 95.6% 64.5%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.50 42.0 4.01e-01 95.6% 94.5%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 45.0 3.91e-01 96.7% 66.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4051081 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.76 50.0 5.87e-01 91.1% 100.0%
4851967 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.74 49.0 5.74e-01 91.1% 98.4%
4946993 4.1.1.479 beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.74 50.0 5.58e-01 95.6% 88.6%
3643549 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.74 49.0 5.13e-01 93.3% 75.0%
4977206 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 44.0 5.26e-01 94.4% 90.0%
3483489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 48.0 5.24e-01 94.4% 81.3%
1112010 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.73 49.0 5.33e-01 92.2% 84.0%
4931072 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.72 50.0 5.54e-01 95.6% 91.4%
4929550 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.71 48.0 5.33e-01 95.6% 88.6%
4045576 4.1.1.161 beta barrels › SH3 › SH3 › SH3 › DUF4178 0.70 49.0 5.62e-01 95.6% 100.0%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.70 50.0 5.37e-01 94.4% 88.0%
1557343 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.70 47.0 5.22e-01 93.3% 90.0%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.69 49.0 5.16e-01 91.1% 82.5%
4954224 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.68 52.0 5.12e-01 97.8% 76.8%
3587129 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 44.0 4.99e-01 88.9% 90.8%
3676628 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.67 48.0 4.33e-01 92.2% 55.8%
3185466 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.67 55.0 4.19e-01 94.4% 39.5%
4423306 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.66 45.0 4.85e-01 95.6% 82.7%
3232054 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.26e-01 94.4% 61.0%
2674741 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.66 39.0 4.77e-01 88.9% 96.4%
4547406 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.65 46.0 4.83e-01 96.7% 81.2%
3188394 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.64 56.0 5.09e-01 94.4% 71.7%
4339993 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.64 45.0 4.54e-01 96.7% 72.2%
3297966 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.64 55.0 4.98e-01 92.2% 80.8%
3821751 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.64 47.0 4.99e-01 98.9% 87.5%
3839369 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.64 44.0 4.71e-01 95.6% 81.2%
4068131 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 44.0 4.35e-01 95.6% 68.4%
4077893 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 44.0 2.69e-01 95.6% 12.3%
3447797 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.63 55.0 4.56e-01 93.3% 89.3%
4012945 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 5.38e-01 95.6% 100.0%
3951961 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.62 47.0 4.66e-01 94.4% 75.8%
4335575 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 47.0 2.69e-01 94.4% 7.8%
3783617 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.60 50.0 5.27e-01 93.3% 100.0%
3867207 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.60 44.0 4.36e-01 94.4% 72.6%
4015757 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 54.0 4.10e-01 100.0% 75.7%
4963019 3445.1.1.1 beta barrels › Uncharacterized protein from gene locus rrnAC0354 › Uncharacterized protein from gene locus rrnAC0354 › Uncharacterized protein from gene locus rrnAC0354 › DUF1684 0.59 48.0 3.82e-01 86.7% 62.9%
3470175 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 46.0 4.88e-01 93.3% 93.8%
4946188 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 45.0 4.78e-01 88.9% 93.8%
577 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 48.0 3.93e-01 96.7% 49.4%
3700517 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.57 41.0 2.88e-01 76.7% 40.3%
3574352 4.1.1.332 beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.57 50.0 4.75e-01 98.9% 90.9%
3650798 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 51.0 4.71e-01 97.8% 93.9%
4060846 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.86e-01 93.3% 93.7%
3584109 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 51.0 4.32e-01 97.8% 84.0%
3449744 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.56 43.0 4.32e-01 80.0% 92.2%
3793700 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.56 50.0 4.17e-01 100.0% 65.6%
3400775 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 38.0 3.40e-01 70.0% 80.8%
3371134 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 50.0 4.51e-01 97.8% 92.5%
26065 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.55 46.0 4.35e-01 96.7% 75.2%
5067458 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 34.0 3.99e-01 76.7% 100.0%
4945464 3445.1.1.1 beta barrels › Uncharacterized protein from gene locus rrnAC0354 › Uncharacterized protein from gene locus rrnAC0354 › Uncharacterized protein from gene locus rrnAC0354 › DUF1684 0.53 42.0 3.46e-01 86.7% 60.6%
4029293 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 43.0 3.84e-01 92.2% 86.7%
3276059 5.1.4.329 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.51 38.0 2.52e-01 81.1% 34.7%
3577548 331.12.1.0 a+b two layers › TBP-like › YugN-like › YugN-like 0.51 35.0 3.26e-01 73.3% 56.6%
3226923 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 39.0 2.70e-01 86.7% 31.1%