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IMGVR_UViG_3300026965_000002-3300026965-Ga0207755_10055523

Arc-Vir

IMGVR_UViG_3300026965_000002-3300026965-Ga0207755_10055523

Quality

85.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-107
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 56.0 4.68e-01 81.1% 81.1%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.70 47.0 4.26e-01 72.2% 51.7%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.70 54.0 4.62e-01 81.1% 90.6%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.68 53.0 3.85e-01 84.4% 30.6%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.68 51.0 4.31e-01 78.9% 88.2%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 51.0 4.52e-01 81.1% 88.6%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 49.0 4.24e-01 77.8% 85.2%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 50.0 4.25e-01 78.9% 81.8%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 50.0 4.19e-01 78.9% 86.5%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 51.0 4.49e-01 81.1% 93.1%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 51.0 4.08e-01 82.2% 42.3%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 51.0 4.50e-01 83.3% 87.3%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 50.0 4.45e-01 82.2% 88.0%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 50.0 4.09e-01 81.1% 74.4%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.65 50.0 4.07e-01 82.2% 52.7%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 51.0 4.54e-01 84.4% 93.1%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.65 52.0 4.60e-01 86.7% 63.4%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 51.0 4.40e-01 84.4% 80.3%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 49.0 4.38e-01 81.1% 88.4%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.65 52.0 3.95e-01 86.7% 40.6%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 50.0 4.09e-01 83.3% 89.2%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.64 47.0 4.30e-01 76.7% 62.7%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 4.35e-01 81.1% 94.5%
1lo7A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 43.0 3.72e-01 70.0% 85.0%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 48.0 4.34e-01 81.1% 90.4%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 5.01e-01 87.8% 96.0%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 47.0 4.22e-01 80.0% 88.4%
1z6bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 49.0 4.22e-01 83.3% 89.4%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 48.0 4.35e-01 81.1% 97.5%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 56.0 3.80e-01 100.0% 93.5%
1nu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 54.0 4.68e-01 97.8% 95.2%
4rljB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 42.0 3.58e-01 70.0% 88.4%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 47.0 4.26e-01 81.1% 93.5%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 3.85e-01 77.8% 97.4%
1by5A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.62 48.0 2.93e-01 82.2% 25.1%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 47.0 4.10e-01 82.2% 81.4%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 4.18e-01 77.8% 89.8%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.89e-01 75.6% 79.3%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 3.98e-01 78.9% 89.6%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 47.0 4.22e-01 84.4% 90.0%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 4.04e-01 81.1% 89.3%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 3.89e-01 82.2% 87.6%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.59 44.0 4.45e-01 81.1% 82.8%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.58 50.0 4.25e-01 97.8% 79.4%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 40.0 3.72e-01 72.2% 93.2%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 49.0 3.94e-01 92.2% 76.2%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.57 49.0 4.28e-01 100.0% 74.1%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.57 39.0 3.20e-01 72.2% 43.6%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 43.0 3.75e-01 83.3% 81.1%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 45.0 3.20e-01 86.7% 47.3%
1tk1A00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.56 49.0 3.75e-01 100.0% 78.5%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 2.83e-01 74.4% 46.7%
2f1xB00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.55 45.0 3.89e-01 88.9% 72.5%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 49.0 4.41e-01 100.0% 97.6%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 47.0 4.30e-01 98.9% 70.7%
4jhcB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.54 46.0 3.73e-01 97.8% 84.6%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 41.0 3.38e-01 82.2% 87.8%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 47.0 3.94e-01 100.0% 85.8%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.79e-01 83.3% 88.1%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 37.0 3.16e-01 75.6% 62.8%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.00e-01 96.7% 35.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3283278 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.72 55.0 4.76e-01 80.0% 91.1%
3808998 331.3.1.28 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.71 55.0 4.12e-01 81.1% 35.6%
3278632 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.71 54.0 4.67e-01 80.0% 88.1%
4873102 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.71 54.0 4.71e-01 84.4% 55.4%
3996829 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.71 47.0 4.35e-01 72.2% 53.9%
3262201 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.70 52.0 4.45e-01 78.9% 76.6%
2553892 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.70 53.0 4.80e-01 80.0% 93.3%
3290450 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.68 52.0 4.48e-01 81.1% 85.3%
5018057 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.68 54.0 4.85e-01 84.4% 63.4%
3732871 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.68 52.0 4.14e-01 81.1% 78.7%
4823574 4030.1.1.1 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B 0.68 50.0 4.18e-01 77.8% 60.3%
5079500 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.68 43.0 3.45e-01 70.0% 32.2%
3696055 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.68 51.0 4.43e-01 78.9% 83.7%
134348 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.67 51.0 4.51e-01 81.1% 88.0%
73715 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.66 50.0 4.30e-01 78.9% 84.8%
5003871 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.66 50.0 4.34e-01 81.1% 91.4%
3708657 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 50.0 4.37e-01 81.1% 94.8%
4014154 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 52.0 4.39e-01 84.4% 77.9%
3703955 1100.1.1.1 beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.65 57.0 4.18e-01 100.0% 95.0%
3973652 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 50.0 4.42e-01 81.1% 89.1%
2410295 5084.5.4.3 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › PorV 0.65 51.0 3.84e-01 84.4% 48.0%
874 9.13.1.3 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.65 52.0 4.60e-01 86.7% 63.4%
3972561 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.65 49.0 4.13e-01 81.1% 71.0%
3226411 243.1.1.82 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 0.64 51.0 4.37e-01 86.7% 99.3%
4940463 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 51.0 4.48e-01 86.7% 57.8%
3889571 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.64 49.0 4.38e-01 81.1% 91.1%
3496336 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 49.0 3.15e-01 84.4% 68.8%
3286088 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.63 49.0 4.50e-01 83.3% 99.2%
1674783 243.1.1.15 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › T4BSS_DotI_IcmL 0.63 49.0 4.22e-01 82.2% 90.6%
3398140 4.1.1.326 beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.62 42.0 4.49e-01 80.0% 82.7%
3952458 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 47.0 4.18e-01 81.1% 88.5%
3452571 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 43.0 4.11e-01 72.2% 80.0%
3811902 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 53.0 4.77e-01 95.6% 92.0%
4065140 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.61 54.0 3.88e-01 100.0% 77.8%
3890886 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 43.0 4.54e-01 75.6% 90.0%
3241811 4026.1.1.1 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.60 52.0 4.23e-01 94.4% 69.1%
4870077 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.60 47.0 4.11e-01 84.4% 92.0%
3385471 4998.1.1.0 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain 0.60 47.0 4.07e-01 88.9% 53.1%
4310932 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.59 52.0 3.82e-01 100.0% 79.2%
3685749 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.59 51.0 4.38e-01 98.9% 73.3%
3578775 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.59 41.0 3.55e-01 72.2% 90.6%
3276558 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.58 46.0 3.18e-01 84.4% 25.0%
4403206 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.58 50.0 4.29e-01 98.9% 65.2%
3591282 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 43.0 3.98e-01 78.9% 89.9%
4025861 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.58 49.0 4.10e-01 97.8% 74.1%
3182613 243.1.1.44 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MBA1 0.58 49.0 3.75e-01 95.6% 82.3%
4668983 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.57 49.0 4.14e-01 97.8% 75.6%
4472109 243.1.1.103 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF30257 0.57 51.0 4.69e-01 100.0% 100.0%
3591329 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 45.0 3.49e-01 90.0% 95.6%
4523830 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.56 47.0 4.44e-01 93.3% 99.1%
5043598 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 48.0 4.23e-01 98.9% 84.3%
3400244 3698.1.1.2 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.55 48.0 3.80e-01 100.0% 91.5%
3501270 2004.1.1.114 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MukB,SbcC_Walker_B 0.55 48.0 3.11e-01 98.9% 29.1%
3432106 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.54 45.0 4.09e-01 93.3% 92.6%
1760411 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.52 41.0 4.32e-01 84.4% 92.6%
3623410 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 44.0 2.79e-01 96.7% 23.9%
2635091 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 43.0 3.51e-01 97.8% 57.8%