←Back to structures

IMGVR_UViG_3300026965_000002-3300026965-Ga0207755_10055530

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300026965_000002-3300026965-Ga0207755_10055530 ↗
Kingdom:: archaea

Quality

73.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-65

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hshE00	3.40.1620.70	Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold ›	0.78	57.0	5.50e-01	80.9%	78.2%
1yu0A01	2.10.10.30	Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) ›	0.77	56.0	5.53e-01	80.9%	82.4%
3n3fA01	3.40.1620.70	Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold ›	0.76	58.0	5.97e-01	83.0%	100.0%
3g7kB02	3.10.310.10	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1	0.56	42.0	2.98e-01	89.4%	79.0%
2o0aA00	3.40.850.20	Alpha Beta › 3-Layer(aba) Sandwich › Kinesin ›	0.51	36.0	2.34e-01	78.7%	26.8%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3987740	3761.1.1.0 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related	0.82	60.0	6.46e-01	78.7%	95.0%
5002640	3761.1.1.1 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N	0.79	59.0	5.81e-01	80.9%	92.0%
3921177	3761.1.1.0 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related	0.78	60.0	5.69e-01	85.1%	70.9%
1505155	3761.1.1.2 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer	0.77	57.0	5.45e-01	80.9%	76.8%
3528795	3761.1.1.0 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related	0.75	58.0	5.90e-01	85.1%	91.1%
2905173	3761.1.1.1 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N	0.73	53.0	5.16e-01	80.9%	85.2%
3989853	77.1.1.13 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR	0.71	63.0	3.80e-01	100.0%	19.0%
2495545	207.2.1.22 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix	0.71	52.0	3.02e-01	80.9%	9.0%
3266378	5.1.4.239 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Dicty_CTDC	0.60	36.0	3.68e-01	87.2%	60.0%
4944920	7516.1.1.26 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3	0.52	44.0	2.73e-01	100.0%	70.5%

D2 high residues 80-146

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2b0rB00	2.160.20.70	Mainly Beta › 3 Solenoid › Pectate Lyase C-like ›	0.64	48.0	3.71e-01	100.0%	34.8%
1a3zA00	2.60.40.420	Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins	0.61	52.0	4.07e-01	97.0%	92.0%
7o7aA01	2.160.20.10	Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like	0.61	53.0	3.30e-01	100.0%	23.5%
4dapA02	3.40.1350.60	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.60	48.0	3.74e-01	89.6%	63.8%
2ifgA01	3.80.10.10	Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor	0.58	49.0	3.84e-01	100.0%	42.9%
1piwA02	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.57	50.0	4.01e-01	100.0%	80.3%
4da2A02	3.40.1350.60	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.52	41.0	3.32e-01	94.0%	75.7%
7bmfA01	3.90.1640.30	Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) ›	0.50	42.0	3.18e-01	100.0%	43.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3711105	208.7.1.6 ↗	beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › Nucleoporin_FG	0.68	41.0	3.17e-01	100.0%	26.7%
3781903	208.1.1.37 ↗	beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hyphal_reg_CWP	0.67	55.0	3.81e-01	100.0%	27.1%
5001355	2490.3.1.1 ↗	a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal proteins L15p and L18e › Ribosomal proteins L15p and L18e › Ribosomal_L27A	0.67	58.0	5.00e-01	100.0%	68.2%
4829184	2004.1.1.565 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › LRR_1, LRR_8	0.57	49.0	3.42e-01	100.0%	28.3%