←Back to structures

IMGVR_UViG_3300026985_000012-3300026985-Ga0207851_10000449

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300026985_000012-3300026985-Ga0207851_10000449 ↗
Kingdom:: archaea

Quality

73.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-79

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1lrzA03	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.73	63.0	5.90e-01	100.0%	79.0%
1nt2B02	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.72	61.0	5.63e-01	100.0%	80.6%
2ptfB02	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.71	52.0	5.06e-01	80.0%	70.2%
2gv9A05	1.10.287.690	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain	0.70	58.0	5.61e-01	100.0%	86.4%
3ehfD01	1.20.5.1930	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.69	58.0	5.46e-01	98.0%	77.8%
4errB00	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.67	55.0	4.80e-01	98.0%	85.5%
2kw6A00	6.10.140.1300	Special › Helix non-globular › Helix Hairpins ›	0.66	59.0	5.45e-01	100.0%	76.9%
1pd3A00	1.10.287.230	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.64	52.0	5.07e-01	90.0%	85.2%
2lf0A01	4.10.860.10	Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain	0.63	52.0	4.99e-01	100.0%	85.0%
1qguB04	1.20.89.10	Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4	0.62	48.0	4.21e-01	90.0%	100.0%
4wesB03	1.20.89.10	Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4	0.62	50.0	4.49e-01	98.0%	81.0%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4461237	4967.1.1.0 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases	0.81	67.0	3.81e-01	92.0%	9.1%
3215306	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.77	69.0	5.75e-01	100.0%	60.0%
4056724	192.6.1.0 ↗	alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain	0.71	49.0	5.08e-01	86.0%	82.2%
5012794	4333.1.1.0 ↗	a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain	0.70	59.0	3.59e-01	100.0%	60.8%
1821875	4970.1.1.1 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B	0.69	58.0	5.57e-01	98.0%	84.7%
3656882	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.69	50.0	3.31e-01	80.0%	18.6%
3595146	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.68	53.0	5.53e-01	86.0%	100.0%
4128596	3710.1.1.1 ↗	alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5	0.65	53.0	4.93e-01	100.0%	72.3%