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IMGVR_UViG_3300026991_000009-3300026991-Ga0207772_10008060

Arc-Vir

IMGVR_UViG_3300026991_000009-3300026991-Ga0207772_10008060

Identity

Kingdom:
archaea

Quality

76.4 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.74 41.0 5.00e-01 89.1% 100.0%
2aklA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.72 41.0 4.82e-01 76.6% 83.7%
1jj2Y00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.72 46.0 4.43e-01 90.6% 57.5%
1nuiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 39.0 4.50e-01 89.1% 95.3%
2idaA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 44.0 4.00e-01 79.7% 62.5%
3mhsA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 45.0 3.62e-01 81.2% 42.5%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 3.61e-01 73.4% 72.8%
2y8nB01 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 34.0 4.07e-01 95.3% 97.6%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.01e-01 84.4% 100.0%
4gkpB00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.52 36.0 2.46e-01 100.0% 18.1%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.76e-01 71.9% 97.7%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 37.0 2.38e-01 76.6% 21.6%
6lcuA01 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.51 33.0 2.84e-01 76.6% 39.8%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.67e-01 96.9% 75.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3409936 375.1.1.76 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RRN7 0.74 40.0 4.90e-01 71.9% 100.0%
8020 375.1.1.40 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YjdM_Zn_Ribbon 0.74 41.0 4.92e-01 78.1% 89.5%
4982959 3922.1.1.357 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 0.72 41.0 3.48e-01 81.2% 35.0%
4934186 375.1.1.322 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Cas12f1-like_TNB 0.72 39.0 4.99e-01 78.1% 97.1%
3581545 375.1.1.76 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RRN7 0.71 39.0 4.68e-01 71.9% 97.1%
4944629 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 39.0 4.22e-01 78.1% 65.5%
4928885 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 45.0 5.16e-01 78.1% 97.8%
5050229 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 40.0 3.91e-01 73.4% 54.3%
4429397 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.65 47.0 3.47e-01 78.1% 44.7%
3829075 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 47.0 3.47e-01 84.4% 54.4%
3223859 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 35.0 3.40e-01 76.6% 52.9%
5046254 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 39.0 4.55e-01 73.4% 100.0%
5011867 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.58 42.0 3.15e-01 78.1% 48.8%
3789569 376.1.1.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var 0.58 43.0 3.55e-01 81.2% 52.5%
4975908 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.56 42.0 2.88e-01 78.1% 87.7%
5055179 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.56 41.0 2.84e-01 78.1% 42.9%
3421203 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.56 34.0 3.53e-01 70.3% 65.0%
5000042 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.56 41.0 2.87e-01 78.1% 89.3%
3576759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 42.0 4.09e-01 81.2% 88.6%
4943798 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.52 39.0 2.84e-01 85.9% 90.5%
3721257 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.51 42.0 2.83e-01 100.0% 95.7%
3826701 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 39.0 3.21e-01 85.9% 83.2%