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IMGVR_UViG_3300027007_000010-3300027007-Ga0207718_1026842
Arc-VirIMGVR_UViG_3300027007_000010-3300027007-Ga0207718_1026842
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-123
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.68 | 51.0 | 4.76e-01 | 79.3% | 96.0% |
| 1kxpD03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.67 | 51.0 | 5.02e-01 | 81.7% | 100.0% |
| 1n5uA05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.67 | 52.0 | 4.71e-01 | 84.1% | 86.6% |
| 1hk3A03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.67 | 52.0 | 5.01e-01 | 82.9% | 95.7% |
| 1zq3P00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 47.0 | 5.00e-01 | 78.0% | 88.2% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.65 | 56.0 | 4.38e-01 | 98.8% | 50.8% |
| 5yh1A01 | 3.90.1640.30 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › | 0.65 | 54.0 | 3.69e-01 | 90.2% | 68.4% |
| 4c0aA02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.62 | 54.0 | 4.86e-01 | 98.8% | 85.6% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 48.0 | 4.55e-01 | 90.2% | 69.9% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 54.0 | 4.88e-01 | 98.8% | 73.2% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.61 | 43.0 | 4.00e-01 | 74.4% | 59.4% |
| 1guxB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 50.0 | 4.24e-01 | 93.9% | 62.4% |
| 4g75A01 | 1.20.1440.280 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.60 | 52.0 | 4.28e-01 | 100.0% | 63.1% |
| 4yosA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 50.0 | 4.04e-01 | 96.3% | 61.9% |
| 8h4pA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 48.0 | 3.38e-01 | 95.1% | 39.4% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 43.0 | 3.49e-01 | 78.0% | 67.8% |
| 1vinA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 49.0 | 4.18e-01 | 95.1% | 71.2% |
| 4rflA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.57 | 48.0 | 3.73e-01 | 96.3% | 83.4% |
| 5dkoA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.57 | 34.0 | 2.65e-01 | 98.8% | 28.7% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 49.0 | 4.48e-01 | 97.6% | 75.9% |
| 1q2lA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.56 | 49.0 | 3.63e-01 | 100.0% | 47.8% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.56 | 45.0 | 4.08e-01 | 86.6% | 89.1% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.56 | 40.0 | 4.02e-01 | 74.4% | 87.7% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.55 | 39.0 | 3.49e-01 | 74.4% | 87.1% |
| 7cj3A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 47.0 | 3.39e-01 | 97.6% | 55.4% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.54 | 35.0 | 3.70e-01 | 75.6% | 74.3% |
| 7nazA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 42.0 | 2.97e-01 | 95.1% | 28.0% |
| 4gyoA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 42.0 | 3.20e-01 | 97.6% | 97.3% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3272819 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.80 | 63.0 | 5.66e-01 | 82.9% | 61.8% |
| 4046675 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.73 | 52.0 | 5.22e-01 | 75.6% | 72.9% |
| 5067099 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.70 | 62.0 | 5.23e-01 | 96.3% | 58.5% |
| 3412630 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.69 | 60.0 | 5.16e-01 | 98.8% | 64.4% |
| 3848799 | 3755.2.1.4 ↗ | alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein › PF26143 | 0.66 | 39.0 | 3.32e-01 | 100.0% | 35.6% |
| 3200990 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 56.0 | 4.58e-01 | 97.6% | 52.0% |
| 3577067 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 54.0 | 4.70e-01 | 95.1% | 76.9% |
| 3953227 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.64 | 39.0 | 3.66e-01 | 100.0% | 50.0% |
| 5042711 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 51.0 | 4.29e-01 | 92.7% | 52.4% |
| 3185992 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.62 | 52.0 | 4.44e-01 | 93.9% | 57.0% |
| 4946659 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 51.0 | 4.66e-01 | 97.6% | 69.1% |
| 4826576 | 150.1.1.5 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 | 0.62 | 37.0 | 3.70e-01 | 100.0% | 57.6% |
| 4946230 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 39.0 | 2.81e-01 | 100.0% | 23.0% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 50.0 | 4.70e-01 | 93.9% | 76.2% |
| 3684868 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.61 | 38.0 | 3.16e-01 | 100.0% | 36.4% |
| 4991215 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.61 | 39.0 | 4.33e-01 | 98.8% | 81.5% |
| 3226186 | 101.1.10.4 ↗ | alpha arrays › HTH › HTH › Cyclin-like › RB_B | 0.61 | 53.0 | 4.21e-01 | 97.6% | 76.5% |
| 3344342 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.61 | 51.0 | 4.66e-01 | 95.1% | 76.4% |
| 3952510 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.61 | 40.0 | 4.23e-01 | 97.6% | 74.7% |
| 4998334 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.60 | 47.0 | 4.57e-01 | 85.4% | 96.7% |
| 1165469 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.59 | 51.0 | 3.84e-01 | 96.3% | 38.6% |
| 3365906 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.59 | 50.0 | 4.73e-01 | 95.1% | 79.0% |
| 4405002 | 109.4.1.218 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP | 0.56 | 43.0 | 3.57e-01 | 86.6% | 45.9% |
| 3706808 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 38.0 | 3.63e-01 | 73.2% | 66.3% |
| 3227 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.53 | 45.0 | 4.00e-01 | 92.7% | 96.6% |
| 4952942 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 42.0 | 4.16e-01 | 89.0% | 81.1% |
| 3720643 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.53 | 45.0 | 3.13e-01 | 96.3% | 48.0% |
| 3468335 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.51 | 40.0 | 2.94e-01 | 87.8% | 48.6% |
D2
high
residues 128-202
Domain cluster:
rep: IMGVR_UViG_3300028191_000341-3300028191-Ga0265595_10096261__D133-202