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IMGVR_UViG_3300027566_000018-3300027566-Ga0209639_100088918

Arc-Vir

IMGVR_UViG_3300027566_000018-3300027566-Ga0209639_100088918

Quality

85.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-60
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 60.0 5.88e-01 90.4% 84.5%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 4.75e-01 100.0% 55.3%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 58.0 5.96e-01 100.0% 100.0%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.24e-01 96.2% 79.2%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 55.0 4.83e-01 100.0% 60.3%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.67 55.0 4.93e-01 92.3% 92.0%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.51e-01 100.0% 56.3%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.48e-01 100.0% 73.8%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.64 52.0 3.58e-01 100.0% 35.8%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.34e-01 100.0% 70.5%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.02e-01 94.2% 45.1%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.40e-01 100.0% 61.2%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 4.63e-01 100.0% 75.0%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.63 52.0 4.33e-01 100.0% 83.7%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 4.99e-01 100.0% 80.6%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.42e-01 100.0% 60.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.23e-01 100.0% 88.0%
2gacB00 3.60.20.30 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase 0.59 45.0 3.43e-01 88.5% 53.2%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 49.0 3.85e-01 100.0% 85.1%
1pbwB00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.58 49.0 3.40e-01 100.0% 42.1%
3c7jA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.56 46.0 3.44e-01 94.2% 71.2%
3l5kA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 43.0 4.09e-01 94.2% 89.7%
2pyqA00 1.10.238.120 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Jann4075-like 0.55 47.0 3.71e-01 100.0% 57.9%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.42e-01 100.0% 85.7%
1bifA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 2.96e-01 92.3% 76.2%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.06e-01 100.0% 86.5%
3ckcA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 39.0 2.81e-01 86.5% 26.6%
2zcuA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.52 43.0 3.49e-01 100.0% 90.4%
2vsnA02 3.40.50.11380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 2.75e-01 92.3% 48.0%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 71.0 6.98e-01 96.2% 85.5%
5013811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 66.0 6.55e-01 92.3% 80.0%
5079440 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 71.0 4.74e-01 100.0% 25.1%
5047162 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 64.0 5.98e-01 90.4% 67.7%
5079851 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 68.0 6.51e-01 100.0% 80.0%
3184342 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 68.0 6.56e-01 100.0% 81.7%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.81 68.0 6.38e-01 100.0% 75.4%
4655717 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.81 73.0 6.44e-01 100.0% 78.7%
2393452 101.43.1.1 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › TerS_N 0.81 68.0 6.65e-01 100.0% 87.5%
3603105 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 64.0 5.72e-01 100.0% 61.3%
3980764 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 63.0 6.59e-01 96.2% 100.0%
4671378 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.80 71.0 5.86e-01 98.1% 60.0%
4929498 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.79 61.0 6.39e-01 96.2% 97.8%
4929599 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.78 69.0 4.43e-01 100.0% 93.3%
4927588 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 69.0 6.14e-01 100.0% 76.0%
4105352 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.76 68.0 4.24e-01 100.0% 97.1%
3489868 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.75 64.0 5.41e-01 100.0% 60.0%
3812799 101.1.1.291 alpha arrays › HTH › HTH › Three-helical HTH › PF26175 0.74 65.0 6.04e-01 100.0% 81.5%
3224502 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.74 64.0 6.34e-01 98.1% 94.5%
3212935 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.74 60.0 5.79e-01 92.3% 83.3%
5027755 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 63.0 5.45e-01 96.2% 66.3%
3955608 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.79e-01 94.2% 85.0%
4977905 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 60.0 5.51e-01 100.0% 70.0%
4392311 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.73 56.0 5.92e-01 88.5% 95.6%
3369428 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 63.0 5.78e-01 100.0% 75.7%
5044345 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 5.36e-01 100.0% 63.7%
4932774 101.40.1.1 alpha arrays › HTH › 40S ribosomal protein S13 N-terminal domain › 40S ribosomal protein S13 N-terminal domain › Ribosomal_S13_N 0.72 62.0 5.34e-01 96.2% 62.5%
3361582 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.36e-01 92.3% 68.6%
4960595 101.1.1.549 alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_1_5 0.72 62.0 5.42e-01 100.0% 96.2%
4994386 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.72 61.0 3.80e-01 98.1% 21.8%
3522325 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.71 61.0 5.69e-01 100.0% 78.5%
3365315 101.1.1.291 alpha arrays › HTH › HTH › Three-helical HTH › PF26175 0.71 61.0 6.00e-01 96.2% 90.9%
3312089 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 60.0 4.94e-01 98.1% 53.0%
3338988 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.71 57.0 5.50e-01 94.2% 80.0%
3358320 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.71 59.0 5.88e-01 96.2% 90.9%
3226857 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.71 58.0 4.99e-01 98.1% 57.6%
3928087 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.70 59.0 5.42e-01 100.0% 72.9%
5045983 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.70 58.0 4.82e-01 100.0% 51.0%
3358560 101.1.2.509 alpha arrays › HTH › HTH › winged helix domain › PF25879 0.70 60.0 5.41e-01 100.0% 78.7%
3492569 101.40.1.1 alpha arrays › HTH › 40S ribosomal protein S13 N-terminal domain › 40S ribosomal protein S13 N-terminal domain › Ribosomal_S13_N 0.70 59.0 5.81e-01 96.2% 90.9%
3265679 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 54.0 5.55e-01 94.2% 92.0%
3789626 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 59.0 5.55e-01 98.1% 80.0%
3578362 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.69 59.0 5.31e-01 100.0% 70.7%
3463735 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.69 57.0 5.67e-01 96.2% 92.7%
3426632 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 58.0 5.58e-01 98.1% 86.7%
4524873 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.69 60.0 5.06e-01 100.0% 66.3%
3468869 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.66e-01 96.2% 94.5%
3932714 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.68 58.0 4.92e-01 100.0% 67.8%
4007449 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 58.0 5.33e-01 100.0% 81.4%
3589193 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 57.0 5.40e-01 100.0% 80.0%
3924709 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.67 55.0 5.18e-01 96.2% 78.5%
4205244 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.67 54.0 4.90e-01 94.2% 66.7%
4024722 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.67 55.0 4.36e-01 94.2% 78.2%
4178332 101.1.2.59 alpha arrays › HTH › HTH › winged helix domain › DUF480 0.66 56.0 3.78e-01 100.0% 28.4%
4944548 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.66 56.0 3.77e-01 100.0% 35.2%
3598642 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 4.08e-01 96.2% 41.4%
4392375 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 54.0 4.39e-01 100.0% 53.6%
4284507 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 54.0 4.43e-01 100.0% 58.1%
4928997 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 4.69e-01 100.0% 61.1%
3827266 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 4.05e-01 100.0% 57.9%
5005164 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 54.0 4.41e-01 100.0% 53.7%
4358890 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 53.0 4.25e-01 100.0% 51.3%
4672256 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 52.0 4.23e-01 100.0% 51.3%
3741636 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 4.64e-01 100.0% 55.9%
4109840 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 52.0 4.40e-01 100.0% 58.0%
5027116 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 51.0 4.12e-01 100.0% 53.0%
3587332 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.62 51.0 3.32e-01 100.0% 19.6%
4979490 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 50.0 4.03e-01 100.0% 49.2%
4976651 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.82e-01 100.0% 77.1%
5018002 2007.2.3.11 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK 0.60 49.0 3.48e-01 94.2% 28.8%
3934187 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 3.78e-01 100.0% 58.5%
3709179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 3.86e-01 100.0% 44.2%
5084064 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.58 43.0 3.49e-01 86.5% 80.0%
3776468 2006.1.2.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases 0.57 46.0 3.18e-01 100.0% 24.5%
5074496 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.57 43.0 3.93e-01 92.3% 88.7%
2982796 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.55 45.0 2.89e-01 100.0% 20.1%
4561525 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 41.0 3.85e-01 98.1% 80.0%
4948638 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.52 43.0 3.81e-01 100.0% 88.1%