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IMGVR_UViG_3300027580_000001-3300027580-Ga0207714_100008971

Arc-Vir

IMGVR_UViG_3300027580_000001-3300027580-Ga0207714_100008971

Identity

Kingdom:
archaea

Quality

78.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-61
PDB
Domain cluster: rep: MG711462.1__AUV56429.1__X__00012__D26-88
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7sbeA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.62 43.0 2.92e-01 75.0% 62.8%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 49.0 4.68e-01 89.3% 83.3%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.08e-01 80.4% 82.4%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.60 46.0 4.18e-01 85.7% 92.3%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 47.0 4.85e-01 89.3% 96.2%
1x4uA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 49.0 4.57e-01 91.1% 87.0%
2yt5A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 46.0 4.44e-01 91.1% 80.3%
1wfkA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 46.0 4.17e-01 91.1% 68.8%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.56 37.0 2.47e-01 89.3% 16.7%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.55 47.0 3.74e-01 96.4% 79.6%
5zb2B00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.53 37.0 3.32e-01 73.2% 83.3%
5xfoA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 37.0 3.78e-01 78.6% 85.7%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.20e-01 85.7% 63.7%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.51 37.0 3.71e-01 82.1% 75.4%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3260588 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.79 54.0 5.66e-01 75.0% 80.0%
5065253 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.67 48.0 4.35e-01 78.6% 73.8%
3263261 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 45.0 5.00e-01 87.5% 95.3%
3622799 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.63 51.0 4.95e-01 89.3% 84.4%
3717537 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 47.0 4.75e-01 89.3% 80.0%
3683515 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.63 51.0 5.04e-01 89.3% 88.3%
4061693 101.28.1.1 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC 0.62 53.0 4.22e-01 94.6% 85.2%
3363358 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.61 49.0 5.13e-01 89.3% 100.0%
4957686 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.61 45.0 4.04e-01 78.6% 72.5%
3590702 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.60 38.0 2.58e-01 75.0% 16.8%
5052686 2003.1.5.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.60 41.0 2.62e-01 75.0% 40.3%
3885120 386.1.1.51 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CEP104_ZnF 0.59 29.0 2.69e-01 71.4% 34.7%
3263296 7516.1.1.35 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch 0.59 40.0 2.50e-01 71.4% 70.3%
3596234 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 36.0 3.95e-01 71.4% 82.5%
3815866 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.58 47.0 4.64e-01 89.3% 91.7%
3593722 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.58 48.0 4.71e-01 91.1% 91.7%
3929292 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.58 46.0 4.77e-01 91.1% 98.0%
3715785 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.57 48.0 4.25e-01 91.1% 72.2%
3599415 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 48.0 4.46e-01 91.1% 77.1%
3427632 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.57 45.0 4.61e-01 91.1% 92.7%
2581800 7523.1.1.52 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3, Lig_chan-Glu_bd 0.57 47.0 3.80e-01 100.0% 66.7%
5041606 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 44.0 4.20e-01 85.7% 86.2%
3931770 376.1.1.14 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › UPF1_Zn_bind 0.56 38.0 3.55e-01 71.4% 60.0%
3599467 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.55 40.0 2.61e-01 82.1% 19.1%
3923870 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.55 41.0 4.28e-01 87.5% 90.0%
3306311 376.1.3.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 0.55 41.0 4.36e-01 89.3% 92.0%
3812939 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.55 45.0 4.43e-01 91.1% 85.0%
3293955 2006.1.1.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.54 41.0 2.63e-01 82.1% 27.0%
3871207 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.54 40.0 2.40e-01 80.4% 59.2%
3219831 376.1.3.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 0.52 42.0 4.03e-01 91.1% 76.9%
3686834 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.52 41.0 3.81e-01 91.1% 85.3%
3219677 387.1.7.1 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein 0.51 35.0 3.01e-01 76.8% 64.8%
4065083 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.50 36.0 3.66e-01 75.0% 89.1%