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IMGVR_UViG_3300027627_000531-3300027627-Ga0208942_10046644
Arc-VirIMGVR_UViG_3300027627_000531-3300027627-Ga0208942_10046644
Identity
- Kingdom:
- archaea
Quality
74.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-43
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ql2C00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.85 | 54.0 | 4.86e-01 | 86.0% | 48.3% |
| 4n1vA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.77 | 59.0 | 4.66e-01 | 90.7% | 39.8% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.77 | 56.0 | 4.79e-01 | 86.0% | 48.6% |
| 2b0cA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.76 | 50.0 | 4.36e-01 | 79.1% | 45.5% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 56.0 | 5.34e-01 | 81.4% | 90.2% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.74 | 62.0 | 4.82e-01 | 100.0% | 46.1% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.74 | 52.0 | 3.63e-01 | 74.4% | 55.6% |
| 2e1qC10 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.74 | 50.0 | 3.59e-01 | 93.0% | 24.2% |
| 1vb3A01 | 3.90.1380.10 | Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain | 0.73 | 51.0 | 4.26e-01 | 76.7% | 40.7% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 58.0 | 5.47e-01 | 97.7% | 76.4% |
| 5ux1D00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.70 | 63.0 | 4.00e-01 | 100.0% | 48.7% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.70 | 57.0 | 4.59e-01 | 95.3% | 49.5% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 58.0 | 4.98e-01 | 97.7% | 57.5% |
| 3vkhB07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 52.0 | 3.45e-01 | 93.0% | 19.6% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 51.0 | 4.83e-01 | 97.7% | 67.9% |
| 1mzbA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 50.0 | 4.15e-01 | 81.4% | 42.7% |
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.68 | 57.0 | 4.41e-01 | 95.3% | 62.9% |
| 3b0bB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.67 | 53.0 | 4.17e-01 | 97.7% | 40.2% |
| 7egfc01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.67 | 59.0 | 4.71e-01 | 100.0% | 54.7% |
| 3p42A02 | 6.10.250.2280 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 58.0 | 4.94e-01 | 97.7% | 91.4% |
| 3pvlA03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.66 | 57.0 | 4.11e-01 | 95.3% | 40.7% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 51.0 | 4.33e-01 | 86.0% | 49.3% |
| 2zc2A00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.66 | 48.0 | 4.11e-01 | 95.3% | 46.7% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.66 | 49.0 | 4.17e-01 | 88.4% | 46.8% |
| 6muwK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.66 | 51.0 | 3.51e-01 | 100.0% | 22.6% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 53.0 | 5.09e-01 | 100.0% | 86.5% |
| 2blfB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.64 | 48.0 | 4.40e-01 | 93.0% | 60.3% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 51.0 | 3.51e-01 | 95.3% | 29.7% |
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.64 | 53.0 | 3.98e-01 | 95.3% | 38.4% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.64 | 49.0 | 4.78e-01 | 93.0% | 77.1% |
| 6hxpA01 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.63 | 44.0 | 3.35e-01 | 74.4% | 33.3% |
| 6p10B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 45.0 | 3.73e-01 | 83.7% | 96.7% |
| 2nr5A00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.63 | 50.0 | 4.61e-01 | 90.7% | 69.0% |
| 1fmjA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 50.0 | 3.02e-01 | 95.3% | 45.6% |
| 3ro6C01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 39.0 | 3.11e-01 | 88.4% | 34.0% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.54 | 45.0 | 3.90e-01 | 95.3% | 59.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3243984 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.83 | 66.0 | 4.76e-01 | 95.3% | 31.2% |
| 1681684 | 244.1.1.9 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C | 0.81 | 68.0 | 4.41e-01 | 97.7% | 22.2% |
| 4620379 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.79 | 61.0 | 4.18e-01 | 88.4% | 36.1% |
| 3839524 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.79 | 61.0 | 4.15e-01 | 88.4% | 36.1% |
| 5051150 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.79 | 59.0 | 3.41e-01 | 81.4% | 9.6% |
| 3287886 | 191.1.1.18 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 | 0.77 | 67.0 | 4.70e-01 | 100.0% | 44.2% |
| 4644218 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.76 | 62.0 | 5.07e-01 | 95.3% | 68.2% |
| 2105089 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.74 | 62.0 | 3.62e-01 | 100.0% | 12.3% |
| 4341780 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.73 | 61.0 | 5.36e-01 | 95.3% | 63.1% |
| 3269970 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.73 | 60.0 | 4.64e-01 | 97.7% | 41.0% |
| 3540079 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.72 | 58.0 | 4.91e-01 | 95.3% | 51.2% |
| 3274011 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 55.0 | 4.87e-01 | 86.0% | 56.9% |
| 3484950 | 605.8.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like | 0.72 | 53.0 | 5.24e-01 | 81.4% | 75.6% |
| 4022862 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.71 | 61.0 | 4.86e-01 | 100.0% | 47.8% |
| 4286282 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.69 | 60.0 | 4.03e-01 | 97.7% | 27.5% |
| 4886642 | 107.1.1.0 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c | 0.69 | 54.0 | 4.82e-01 | 90.7% | 60.0% |
| 5034788 | 103.6.1.0 ↗ | alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain | 0.69 | 52.0 | 5.16e-01 | 83.7% | 80.0% |
| 3437734 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.68 | 51.0 | 4.43e-01 | 79.1% | 52.3% |
| 3929142 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 51.0 | 4.56e-01 | 90.7% | 60.0% |
| 4994844 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.66 | 55.0 | 3.54e-01 | 100.0% | 33.6% |
| 3398327 | 103.12.1.6 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › Tea_helical | 0.64 | 49.0 | 4.74e-01 | 88.4% | 74.0% |
| 4982694 | 3843.1.1.35 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF1634 | 0.63 | 53.0 | 4.15e-01 | 97.7% | 63.3% |
| 4982784 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.62 | 47.0 | 4.29e-01 | 93.0% | 61.7% |
| 4646832 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 46.0 | 3.07e-01 | 90.7% | 84.8% |
| 3296177 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.59 | 45.0 | 3.78e-01 | 88.4% | 46.3% |
| 4660623 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 47.0 | 3.86e-01 | 95.3% | 45.6% |
| 4543805 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.57 | 44.0 | 3.39e-01 | 100.0% | 38.0% |