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IMGVR_UViG_3300027630_000017-3300027630-Ga0209432_10004919

Arc-Vir

IMGVR_UViG_3300027630_000017-3300027630-Ga0209432_10004919

Identity

Kingdom:
archaea

Quality

80.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-114
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.85 61.0 5.63e-01 77.4% 60.6%
1zbuB01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.71 62.0 5.43e-01 92.5% 74.3%
1jeqA05 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.69 57.0 5.83e-01 90.6% 92.2%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.66 51.0 5.12e-01 84.9% 81.8%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 39.0 4.12e-01 81.1% 74.5%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.54 34.0 3.74e-01 79.2% 82.9%
1oxjA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.52 36.0 3.50e-01 71.7% 95.1%
4csrA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.51 36.0 3.01e-01 77.4% 44.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4142119 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.88 59.0 6.68e-01 79.2% 92.5%
3990939 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.86 61.0 6.01e-01 77.4% 70.9%
3267637 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 65.0 6.69e-01 84.9% 86.0%
3178428 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 58.0 6.24e-01 77.4% 86.7%
4026839 130.1.2.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD 0.83 72.0 4.83e-01 98.1% 27.0%
3737653 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.82 57.0 5.93e-01 77.4% 78.0%
1066185 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.79 61.0 6.08e-01 84.9% 79.6%
3259450 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.76 57.0 6.07e-01 90.6% 93.3%
4628644 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.75 59.0 6.40e-01 88.7% 97.8%
3171543 130.1.2.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD 0.75 67.0 4.33e-01 100.0% 34.3%
3248243 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.73 62.0 5.41e-01 94.3% 72.5%
3191289 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.72 61.0 6.33e-01 92.5% 96.0%
1168191 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.71 62.0 5.40e-01 92.5% 73.3%
3514343 130.1.2.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD 0.70 64.0 4.15e-01 100.0% 24.1%
4517630 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.70 59.0 6.10e-01 88.7% 94.0%
3785386 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 57.0 5.04e-01 92.5% 68.8%
3128 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.69 57.0 5.83e-01 90.6% 92.2%
3253225 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.69 58.0 4.95e-01 92.5% 80.0%
3739641 2004.1.1.110 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ORC2 0.69 61.0 4.08e-01 96.2% 44.9%
3731371 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 37.0 3.69e-01 84.9% 60.0%
4958380 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.56 44.0 2.88e-01 92.5% 36.1%