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IMGVR_UViG_3300027639_000024-3300027639-Ga0209387_10009625
Arc-VirIMGVR_UViG_3300027639_000024-3300027639-Ga0209387_10009625
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-84
Domain cluster:
rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00096__D70-143
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 35.7 | 7.00e-09 | 61.8% | 91.3% |
D2
medium
residues 88-145
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gatA00 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.85 | 56.0 | 5.33e-01 | 86.2% | 59.1% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.71 | 55.0 | 5.69e-01 | 94.8% | 89.1% |
| 2ecjA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 45.0 | 4.56e-01 | 87.9% | 65.5% |
| 2dloA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.65 | 51.0 | 4.61e-01 | 94.8% | 61.7% |
| 6iknD01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.64 | 39.0 | 2.52e-01 | 86.2% | 13.1% |
| 2csvA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.62 | 39.0 | 3.69e-01 | 87.9% | 51.4% |
| 3gv4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 41.0 | 3.52e-01 | 86.2% | 42.4% |
| 3mekA02 | 6.10.140.2220 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 35.0 | 3.79e-01 | 77.6% | 69.4% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.59 | 41.0 | 4.07e-01 | 86.2% | 71.0% |
| 2g43B01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 41.0 | 3.47e-01 | 86.2% | 49.0% |
| 2od1A00 | 6.10.140.2220 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 32.0 | 3.39e-01 | 79.3% | 68.0% |
| 1yuiA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.52 | 33.0 | 3.41e-01 | 74.1% | 66.7% |
| 2ma5A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 37.0 | 3.69e-01 | 93.1% | 73.8% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3304269 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.89 | 59.0 | 7.08e-01 | 89.7% | 100.0% |
| 3501835 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.79 | 47.0 | 5.74e-01 | 77.6% | 100.0% |
| 3624345 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.76 | 51.0 | 5.93e-01 | 82.8% | 100.0% |
| 2069062 | 376.1.1.29 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 | 0.76 | 50.0 | 5.07e-01 | 89.7% | 69.6% |
| 4853380 | 376.1.1.35 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_14 | 0.74 | 55.0 | 4.84e-01 | 96.6% | 54.1% |
| 5049661 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.71 | 44.0 | 4.77e-01 | 79.3% | 80.0% |
| 3485806 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.65 | 50.0 | 4.40e-01 | 94.8% | 57.6% |
| 3242528 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 49.0 | 4.72e-01 | 82.8% | 73.8% |
| 4970980 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 44.0 | 4.37e-01 | 86.2% | 69.8% |
| 185477 | 4255.1.1.1 ↗ | few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 | 0.62 | 52.0 | 5.02e-01 | 93.1% | 82.1% |
| 1735822 | 376.1.1.35 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_14 | 0.62 | 56.0 | 4.64e-01 | 100.0% | 92.0% |
| 4161387 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.61 | 49.0 | 4.87e-01 | 91.4% | 85.0% |
| 3714085 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.60 | 37.0 | 4.18e-01 | 82.8% | 87.5% |
| 3550281 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.60 | 49.0 | 4.49e-01 | 89.7% | 80.0% |
| 8219 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.60 | 35.0 | 3.75e-01 | 79.3% | 68.1% |
| 4023618 | 377.1.1.28 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Pcf11_C | 0.59 | 46.0 | 4.63e-01 | 86.2% | 91.7% |
| 3502501 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.59 | 46.0 | 4.27e-01 | 89.7% | 66.7% |
| 3300469 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.59 | 39.0 | 4.16e-01 | 86.2% | 80.0% |
| 3475334 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.59 | 36.0 | 4.06e-01 | 77.6% | 87.5% |
| 3712416 | 375.1.1.187 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zf_2nd_IFT121 | 0.56 | 44.0 | 4.18e-01 | 86.2% | 78.6% |
| 3459594 | 377.9.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like | 0.56 | 38.0 | 4.21e-01 | 82.8% | 93.3% |
| 3887981 | 377.1.1.28 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Pcf11_C | 0.55 | 45.0 | 4.55e-01 | 93.1% | 91.7% |
| 4002569 | 376.1.1.78 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 | 0.54 | 42.0 | 3.91e-01 | 86.2% | 73.3% |
| 3601822 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.54 | 44.0 | 3.91e-01 | 94.8% | 76.7% |
| 5067072 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.54 | 42.0 | 4.51e-01 | 93.1% | 100.0% |
| 3269829 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.53 | 33.0 | 3.52e-01 | 79.3% | 77.8% |
| 3480360 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.53 | 36.0 | 3.51e-01 | 75.9% | 64.6% |
| 3243797 | 377.1.1.28 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Pcf11_C | 0.52 | 40.0 | 4.09e-01 | 87.9% | 89.1% |
| 3453672 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.51 | 36.0 | 3.51e-01 | 86.2% | 66.2% |