←Back to structures
IMGVR_UViG_3300027691_000031-3300027691-Ga0209485_100082928
Arc-VirIMGVR_UViG_3300027691_000031-3300027691-Ga0209485_100082928
Identity
- Kingdom:
- archaea
Quality
76.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-111
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6kcvA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 57.0 | 4.12e-01 | 83.3% | 34.2% |
| 1wrjA01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.70 | 33.0 | 3.80e-01 | 88.9% | 61.2% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.67 | 43.0 | 4.35e-01 | 100.0% | 66.3% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.66 | 41.0 | 4.02e-01 | 100.0% | 56.6% |
| 4csbA00 | 2.40.128.480 | Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein | 0.64 | 36.0 | 3.31e-01 | 96.7% | 43.4% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 39.0 | 4.01e-01 | 100.0% | 67.4% |
| 5eoxB03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 43.0 | 3.85e-01 | 76.7% | 98.4% |
| 3bczA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.57 | 47.0 | 3.34e-01 | 91.1% | 87.7% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 35.0 | 3.79e-01 | 97.8% | 74.0% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 50.0 | 4.67e-01 | 95.6% | 80.2% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 49.0 | 3.35e-01 | 97.8% | 100.0% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.56 | 47.0 | 3.72e-01 | 100.0% | 83.9% |
| 1uisA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.55 | 46.0 | 3.65e-01 | 100.0% | 82.1% |
| 3lmlA03 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 39.0 | 4.09e-01 | 95.6% | 81.2% |
| 6y1zA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.54 | 43.0 | 3.40e-01 | 91.1% | 78.8% |
| 6d6tA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.53 | 43.0 | 3.38e-01 | 91.1% | 79.0% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.53 | 39.0 | 3.87e-01 | 100.0% | 74.5% |
| 3pfoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 47.0 | 4.22e-01 | 100.0% | 71.9% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 40.0 | 4.02e-01 | 98.9% | 78.9% |
| 1aj6A00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 43.0 | 3.45e-01 | 92.2% | 78.9% |
| 5tdeA01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 42.0 | 3.54e-01 | 85.6% | 66.4% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 4.01e-01 | 100.0% | 69.8% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 42.0 | 3.55e-01 | 86.7% | 78.0% |
| 1el6A02 | 2.20.20.20 | Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain | 0.51 | 28.0 | 3.39e-01 | 97.8% | 95.7% |
| 2c9jA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 43.0 | 3.45e-01 | 100.0% | 47.9% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.51 | 34.0 | 3.88e-01 | 100.0% | 95.3% |
| 3cwvA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.51 | 42.0 | 3.40e-01 | 95.6% | 79.8% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.89e-01 | 100.0% | 69.8% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.93e-01 | 100.0% | 72.2% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.50 | 34.0 | 3.74e-01 | 100.0% | 91.2% |
| 4afhE00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.50 | 43.0 | 3.36e-01 | 97.8% | 79.2% |
| 3ct9A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 3.93e-01 | 100.0% | 75.7% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5037858 | 2484.2.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain | 0.71 | 35.0 | 3.95e-01 | 76.7% | 61.4% |
| None | — | 0.70 | 43.0 | 4.17e-01 | 100.0% | 56.0% | |
| 197096 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.66 | 41.0 | 3.59e-01 | 100.0% | 41.5% |
| 3675679 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.64 | 50.0 | 3.65e-01 | 84.4% | 65.4% |
| 3719897 | 227.1.1.18 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C | 0.62 | 36.0 | 3.23e-01 | 100.0% | 40.8% |
| 3474774 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.62 | 53.0 | 3.74e-01 | 100.0% | 98.7% |
| 3874027 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.60 | 52.0 | 3.66e-01 | 100.0% | 97.8% |
| 4936814 | 2484.1.1.23 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydantoinase_A | 0.59 | 53.0 | 3.77e-01 | 98.9% | 33.2% |
| 3388157 | 2484.1.1.262 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27037 | 0.59 | 45.0 | 3.60e-01 | 81.1% | 88.8% |
| 4973645 | 11.1.1.130 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 | 0.59 | 37.0 | 3.74e-01 | 100.0% | 62.2% |
| 3173192 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.58 | 37.0 | 2.48e-01 | 100.0% | 17.1% |
| 3224621 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 38.0 | 4.09e-01 | 96.7% | 80.0% |
| 4937451 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.57 | 38.0 | 4.19e-01 | 98.9% | 88.6% |
| 3245955 | 5090.1.1.8 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF | 0.56 | 40.0 | 2.71e-01 | 75.6% | 86.6% |
| 3286934 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 47.0 | 3.71e-01 | 95.6% | 53.5% |
| 3365468 | 844.1.1.5 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 | 0.54 | 48.0 | 3.56e-01 | 100.0% | 91.1% |
| 4955641 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.54 | 42.0 | 4.09e-01 | 100.0% | 76.0% |
| 4976249 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 45.0 | 4.13e-01 | 91.1% | 99.1% |
| 141279 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.53 | 47.0 | 4.18e-01 | 100.0% | 70.2% |
| 3972051 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 42.0 | 3.76e-01 | 86.7% | 87.7% |
| 3625109 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.53 | 41.0 | 3.26e-01 | 85.6% | 97.5% |
| 3689299 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 33.0 | 3.09e-01 | 91.1% | 50.9% |
| 4965450 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.52 | 43.0 | 4.01e-01 | 100.0% | 72.7% |
| 1034330 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.52 | 42.0 | 3.55e-01 | 86.7% | 78.0% |
| 5014271 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.52 | 42.0 | 3.84e-01 | 100.0% | 66.7% |
| 3386604 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 43.0 | 3.99e-01 | 100.0% | 72.2% |
| 3312048 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 43.0 | 3.98e-01 | 100.0% | 72.2% |
| 5042784 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 44.0 | 3.98e-01 | 93.3% | 94.2% |
| 3972333 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.51 | 43.0 | 3.98e-01 | 100.0% | 72.2% |
| 3836896 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 40.0 | 2.70e-01 | 84.4% | 38.1% |
| 4513602 | 225.1.1.7 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 | 0.51 | 43.0 | 3.42e-01 | 96.7% | 83.6% |
| 4984209 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 41.0 | 3.80e-01 | 100.0% | 67.5% |
| 3959843 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.50 | 43.0 | 3.26e-01 | 98.9% | 74.6% |