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IMGVR_UViG_3300027706_000155-3300027706-Ga0209581_100337122
Arc-VirIMGVR_UViG_3300027706_000155-3300027706-Ga0209581_100337122
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-57
Domain cluster:
rep: IMGVR_UViG_7000000171_000112-7000000171-SRS052697_LANL_scaffold_75554__gene_171384__D10-57
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ub4C00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.87 | 59.0 | 5.29e-01 | 78.2% | 52.0% |
| 1mvfD00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.83 | 56.0 | 6.12e-01 | 78.2% | 88.6% |
| 1yfbA00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.76 | 51.0 | 5.22e-01 | 76.4% | 73.1% |
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.73 | 51.0 | 5.10e-01 | 74.5% | 71.9% |
| 2l66A00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.71 | 48.0 | 4.88e-01 | 72.7% | 71.7% |
| 4l3rA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.68 | 38.0 | 2.80e-01 | 100.0% | 21.0% |
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.67 | 38.0 | 4.35e-01 | 100.0% | 78.9% |
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.65 | 42.0 | 4.70e-01 | 100.0% | 90.2% |
| 8f5pE01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 50.0 | 3.01e-01 | 83.6% | 42.1% |
| 1r61A00 | 3.50.30.50 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase | 0.64 | 53.0 | 3.74e-01 | 100.0% | 65.4% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.64 | 53.0 | 4.33e-01 | 100.0% | 91.3% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 36.0 | 4.08e-01 | 100.0% | 81.1% |
| 3e19B01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.62 | 46.0 | 4.44e-01 | 98.2% | 70.3% |
| 1dgsA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 53.0 | 4.91e-01 | 100.0% | 100.0% |
| 2k5iA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.61 | 47.0 | 4.19e-01 | 100.0% | 57.1% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.61 | 35.0 | 3.26e-01 | 100.0% | 41.1% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.61 | 36.0 | 3.66e-01 | 100.0% | 57.1% |
| 4oc8A02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 37.0 | 2.67e-01 | 100.0% | 20.3% |
| 4c92C00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 3.37e-01 | 100.0% | 50.6% |
| 6fgjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.55 | 39.0 | 3.06e-01 | 81.8% | 80.7% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.54 | 47.0 | 3.34e-01 | 100.0% | 52.0% |
| 3cebA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.54 | 47.0 | 4.12e-01 | 100.0% | 85.9% |
| 6wulB01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.54 | 40.0 | 2.44e-01 | 100.0% | 12.5% |
| 4qmgC01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 46.0 | 3.38e-01 | 100.0% | 56.0% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 36.0 | 2.58e-01 | 70.9% | 48.9% |
| 4e3wA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 45.0 | 2.86e-01 | 100.0% | 89.1% |
| 4jg2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 46.0 | 3.25e-01 | 100.0% | 78.9% |
| 2be3B01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 38.0 | 2.90e-01 | 76.4% | 71.1% |
| 2d8bA01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 31.0 | 2.35e-01 | 94.5% | 20.7% |
| 1fi8C00 | 2.60.40.550 | Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin | 0.52 | 36.0 | 3.23e-01 | 70.9% | 51.3% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 43.0 | 3.60e-01 | 100.0% | 85.5% |
| 2xvsA00 | 2.40.50.550 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 46.0 | 3.29e-01 | 100.0% | 50.6% |
| 2id0A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 45.0 | 4.07e-01 | 100.0% | 75.6% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.52 | 39.0 | 3.03e-01 | 90.9% | 80.8% |
| 1f20A02 | 1.20.990.10 | Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 | 0.51 | 35.0 | 2.64e-01 | 72.7% | 80.5% |
| 2ba0A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 44.0 | 3.83e-01 | 100.0% | 86.2% |
| 1vwxT01 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.50 | 31.0 | 2.64e-01 | 100.0% | 32.0% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 38.0 | 3.26e-01 | 89.1% | 93.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959387 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.91 | 62.0 | 6.80e-01 | 80.0% | 86.7% |
| 3588700 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.85 | 63.0 | 5.49e-01 | 78.2% | 53.8% |
| 4929443 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.85 | 70.0 | 7.25e-01 | 92.7% | 100.0% |
| 5032176 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.81 | 58.0 | 5.63e-01 | 76.4% | 68.3% |
| 5078891 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.80 | 60.0 | 6.02e-01 | 80.0% | 83.6% |
| 5032935 | 304.8.1.112 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MazE_antitoxin | 0.76 | 51.0 | 3.78e-01 | 72.7% | 28.1% |
| 3353021 | 1.1.11.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like | 0.75 | 67.0 | 5.02e-01 | 100.0% | 88.1% |
| 4956065 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.73 | 63.0 | 5.20e-01 | 98.2% | 98.0% |
| 3336210 | 1.1.11.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › DUF7271 | 0.73 | 64.0 | 5.43e-01 | 98.2% | 96.7% |
| 3309164 | 1.1.11.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like | 0.72 | 64.0 | 4.81e-01 | 100.0% | 85.4% |
| 5050683 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.71 | 40.0 | 3.02e-01 | 100.0% | 23.2% |
| 3466598 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.71 | 63.0 | 4.89e-01 | 100.0% | 84.0% |
| 1282166 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.71 | 50.0 | 4.89e-01 | 76.4% | 71.7% |
| 3460772 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.70 | 63.0 | 4.79e-01 | 100.0% | 78.4% |
| 3371720 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.70 | 60.0 | 4.75e-01 | 98.2% | 100.0% |
| 3038102 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.68 | 49.0 | 4.88e-01 | 78.2% | 87.5% |
| 5027694 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.66 | 47.0 | 4.78e-01 | 76.4% | 79.6% |
| 3467088 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.65 | 56.0 | 4.54e-01 | 100.0% | 94.4% |
| 4931364 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 35.0 | 3.01e-01 | 100.0% | 32.2% |
| 3451717 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.62 | 44.0 | 3.89e-01 | 76.4% | 50.6% |
| 3215090 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 52.0 | 4.97e-01 | 98.2% | 95.4% |
| 3214307 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.61 | 34.0 | 4.06e-01 | 100.0% | 85.7% |
| 3352475 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.59 | 38.0 | 3.43e-01 | 100.0% | 48.0% |
| 4218429 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.59 | 51.0 | 3.50e-01 | 100.0% | 52.2% |
| 3244273 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 49.0 | 4.60e-01 | 98.2% | 91.4% |
| 4603703 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 46.0 | 3.39e-01 | 100.0% | 78.8% |
| 3581971 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.54 | 44.0 | 3.30e-01 | 100.0% | 38.8% |
| 4983129 | 2.1.1.109 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 | 0.53 | 46.0 | 4.04e-01 | 100.0% | 91.8% |
| 3913384 | 5.1.3.117 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 | 0.53 | 39.0 | 2.39e-01 | 100.0% | 11.8% |
| 3858464 | 2.1.1.213 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_POT1A | 0.53 | 44.0 | 3.29e-01 | 100.0% | 76.8% |
| 4024020 | 2.1.1.109 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 | 0.52 | 46.0 | 3.87e-01 | 100.0% | 88.4% |
| 2544590 | 2.1.1.58 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF35_N | 0.52 | 44.0 | 3.56e-01 | 100.0% | 56.8% |
| 3691245 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.52 | 45.0 | 2.95e-01 | 100.0% | 90.2% |
| 5015538 | 205.1.1.22 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_21 | 0.51 | 46.0 | 3.61e-01 | 100.0% | 68.7% |
| 5053607 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 45.0 | 3.80e-01 | 100.0% | 91.6% |
| 3475612 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.51 | 42.0 | 3.15e-01 | 100.0% | 41.2% |
| 3467313 | 206.1.1.26 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Act-Frag_cataly | 0.51 | 44.0 | 2.71e-01 | 100.0% | 15.8% |