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IMGVR_UViG_3300027742_000060-3300027742-Ga0209121_100055694

Arc-Vir

IMGVR_UViG_3300027742_000060-3300027742-Ga0209121_100055694

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-51
PDB
Domain cluster: representative
D2 medium residues 59-198
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09684.16 best Tail_P2_I 30.8 3.60e-07 73.6% 46.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003241 102.7.1.1 alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I 0.84 49.0 5.41e-01 92.9% 71.3%
3964966 102.7.1.1 alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I 0.73 51.0 5.22e-01 95.7% 73.3%
D3 medium residues 202-288
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.70 53.0 4.96e-01 96.6% 65.7%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.67 57.0 4.67e-01 93.1% 74.5%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.66 51.0 3.17e-01 83.9% 71.9%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 53.0 4.62e-01 88.5% 71.8%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 52.0 4.60e-01 90.8% 71.7%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.63 44.0 4.63e-01 100.0% 82.3%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 52.0 4.64e-01 94.3% 72.4%
3w0fA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.61 43.0 3.95e-01 74.7% 88.2%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 42.0 4.36e-01 72.4% 90.4%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 4.43e-01 90.8% 72.0%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 50.0 4.21e-01 94.3% 81.3%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.60 48.0 4.97e-01 87.4% 95.2%
2f09A00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.60 48.0 4.91e-01 94.3% 91.5%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 41.0 2.71e-01 71.3% 43.3%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.59 38.0 3.43e-01 74.7% 45.2%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 50.0 4.53e-01 97.7% 68.1%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.58 45.0 3.30e-01 88.5% 50.5%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 45.0 3.22e-01 87.4% 85.5%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.85e-01 80.5% 42.2%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.57 36.0 4.09e-01 72.4% 90.2%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 39.0 3.34e-01 71.3% 46.8%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.71e-01 81.6% 59.1%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 3.23e-01 89.7% 35.4%
5mrwB01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.55 46.0 4.07e-01 92.0% 97.7%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.55 46.0 4.48e-01 92.0% 93.7%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.55 47.0 4.46e-01 97.7% 89.6%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 40.0 3.27e-01 96.6% 41.7%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 3.09e-01 92.0% 33.2%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.54 45.0 4.22e-01 90.8% 81.3%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.54 38.0 2.29e-01 73.6% 16.5%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 46.0 3.77e-01 100.0% 49.7%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 46.0 4.09e-01 96.6% 84.8%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.84e-01 90.8% 65.7%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.54 44.0 4.14e-01 94.3% 88.2%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 44.0 3.02e-01 90.8% 38.1%
4r78A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 43.0 4.21e-01 90.8% 92.7%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.53 46.0 3.38e-01 100.0% 36.4%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.26e-01 94.3% 56.3%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 43.0 3.15e-01 97.7% 70.2%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 3.84e-01 100.0% 63.0%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 38.0 3.42e-01 79.3% 82.5%
1n9eA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 38.0 2.39e-01 80.5% 69.6%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 42.0 3.41e-01 100.0% 66.2%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.73e-01 100.0% 63.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1238188 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.74 34.0 4.48e-01 77.0% 80.9%
3952398 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.68 57.0 3.90e-01 90.8% 34.2%
3764436 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.66 54.0 4.33e-01 89.7% 83.4%
3480502 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 48.0 2.86e-01 77.0% 14.6%
3918694 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.64 50.0 4.97e-01 96.6% 80.0%
3890410 11.2.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4550 0.64 46.0 3.68e-01 100.0% 40.0%
3541529 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.64 51.0 3.31e-01 88.5% 28.8%
3938829 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 46.0 2.97e-01 77.0% 31.2%
None 0.63 46.0 2.61e-01 77.0% 20.6%
3938828 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 46.0 2.92e-01 77.0% 24.8%
3290823 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.62 41.0 4.45e-01 79.3% 80.0%
4389597 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 47.0 4.72e-01 89.7% 77.8%
3843979 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 44.0 2.91e-01 75.9% 24.1%
4647627 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.61 50.0 3.84e-01 92.0% 96.7%
3922650 5.1.4.610 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF7165 0.61 44.0 2.92e-01 75.9% 25.9%
3791091 5.1.4.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.60 44.0 2.84e-01 95.4% 15.1%
3716389 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.60 49.0 3.24e-01 87.4% 30.1%
3773175 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.60 49.0 3.95e-01 93.1% 80.0%
3587514 243.1.1.17 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.59 42.0 3.69e-01 73.6% 93.8%
1891431 9.1.1.28 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Pallilysin 0.59 49.0 4.35e-01 92.0% 72.8%
3597007 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.58 44.0 3.53e-01 86.2% 40.5%
5040837 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.58 41.0 4.34e-01 89.7% 84.0%
3734952 4252.1.1.12 beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.58 49.0 3.93e-01 96.6% 87.6%
3976843 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.57 45.0 4.54e-01 93.1% 85.4%
4019152 5.1.3.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TrAA12 0.57 41.0 2.65e-01 75.9% 19.1%
4018312 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.57 51.0 3.87e-01 100.0% 82.0%
4940665 9.16.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.57 41.0 4.19e-01 92.0% 81.7%
4889522 3321.1.1.2 a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › DNA_pol_B_N 0.56 42.0 3.95e-01 82.8% 63.4%
4197086 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 39.0 2.71e-01 73.6% 85.2%
5033243 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.55 40.0 4.20e-01 92.0% 85.0%
3643195 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.55 44.0 3.96e-01 87.4% 97.6%
3936775 59.1.4.1 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.55 47.0 3.78e-01 94.3% 48.8%
3169646 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 45.0 4.45e-01 96.6% 84.9%
3291702 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 47.0 3.96e-01 96.6% 66.0%
3717071 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.55 47.0 3.21e-01 100.0% 78.6%
3596915 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 46.0 2.84e-01 96.6% 34.6%
3419120 59.1.4.1 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.54 46.0 3.83e-01 94.3% 58.7%
3689743 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.54 47.0 3.73e-01 97.7% 60.6%
3569168 3164.1.1.2 few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › SWIM 0.54 36.0 3.70e-01 70.1% 85.9%
5051984 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.92e-01 87.4% 90.0%
3698130 216.1.1.14 a+b two layers › UBC-like › UBC-like › UBC-like › Med1 0.53 46.0 4.37e-01 96.6% 86.7%
3497279 59.1.4.0 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 0.52 45.0 3.71e-01 94.3% 54.2%
3599152 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.52 46.0 3.98e-01 100.0% 72.1%
3952469 3794.1.1.2 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.52 43.0 3.85e-01 93.1% 88.5%
4991973 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 40.0 2.77e-01 94.3% 25.0%
4589583 2008.1.1.191 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.52 43.0 3.42e-01 88.5% 57.2%
3240647 3794.1.1.3 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.52 45.0 4.07e-01 98.9% 82.4%
3636368 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.52 45.0 3.91e-01 98.9% 88.6%
3332318 331.2.1.11 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › COR-B 0.52 46.0 3.55e-01 96.6% 45.3%
3805333 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.52 46.0 3.49e-01 96.6% 44.0%
3869277 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.51 45.0 3.54e-01 96.6% 49.2%
3288251 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.51 44.0 3.70e-01 97.7% 68.4%
3246560 5.1.4.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.51 41.0 2.64e-01 89.7% 84.4%