Back to structures

IMGVR_UViG_3300027784_001235-3300027784-Ga0207421_100110834

Arc-Vir

IMGVR_UViG_3300027784_001235-3300027784-Ga0207421_100110834

Quality

71.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-99
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 41.0 5.02e-01 83.3% 95.0%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.66 39.0 4.85e-01 80.2% 96.6%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.64 38.0 4.53e-01 80.2% 88.9%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.63 47.0 4.08e-01 78.1% 81.2%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.63 50.0 5.13e-01 85.4% 90.0%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 40.0 3.64e-01 86.5% 49.2%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.61 44.0 3.98e-01 77.1% 82.1%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 52.0 4.57e-01 94.8% 76.7%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 49.0 4.72e-01 91.7% 92.0%
1yx2A02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.60 40.0 4.19e-01 100.0% 75.6%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 4.11e-01 77.1% 95.7%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 49.0 4.04e-01 88.5% 95.7%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 37.0 3.86e-01 75.0% 69.0%
4ao8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 42.0 3.18e-01 75.0% 72.2%
1u17A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 52.0 4.22e-01 100.0% 71.4%
5eanA01 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 35.0 3.37e-01 100.0% 52.8%
2e5aA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.57 48.0 4.86e-01 91.7% 98.9%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 46.0 4.15e-01 88.5% 76.3%
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.57 39.0 4.09e-01 92.7% 79.1%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 34.0 3.97e-01 91.7% 91.9%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 40.0 2.82e-01 71.9% 42.0%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 50.0 4.45e-01 100.0% 74.6%
4meaA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 40.0 2.75e-01 71.9% 36.1%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.56 46.0 3.16e-01 90.6% 73.2%
4zn4A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.91e-01 85.4% 33.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.55 41.0 3.71e-01 81.2% 100.0%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.55 39.0 3.53e-01 100.0% 51.4%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.36e-01 100.0% 86.7%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 35.0 3.44e-01 85.4% 60.2%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.54 43.0 3.84e-01 90.6% 59.4%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.51e-01 100.0% 54.5%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.40e-01 84.4% 51.1%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 44.0 4.24e-01 100.0% 80.6%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.69e-01 89.6% 90.2%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.80e-01 79.2% 71.3%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 3.70e-01 89.6% 66.4%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.53 42.0 3.87e-01 87.5% 66.9%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 47.0 3.30e-01 97.9% 79.6%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 41.0 3.54e-01 86.5% 61.9%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.66e-01 84.4% 83.1%
6r3mA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 46.0 3.89e-01 100.0% 95.2%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 39.0 3.35e-01 78.1% 92.6%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.52 45.0 3.98e-01 100.0% 81.3%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.87e-01 97.9% 79.0%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.51 39.0 4.08e-01 88.5% 92.9%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.20e-01 86.5% 86.2%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.50 44.0 3.88e-01 100.0% 93.2%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.50 42.0 3.40e-01 95.8% 84.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3559516 391.1.1.28 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › CHRDL_1_2_C 0.71 43.0 4.29e-01 84.4% 58.0%
5043037 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.70 61.0 6.08e-01 100.0% 91.0%
3968112 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.69 41.0 3.51e-01 87.5% 37.7%
3825621 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.62 49.0 4.97e-01 85.4% 97.9%
4996269 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.62 51.0 3.96e-01 92.7% 82.7%
3286735 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.61 39.0 4.19e-01 80.2% 74.1%
3251953 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 31.0 4.08e-01 74.0% 100.0%
3210512 220.1.1.214 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_C 0.60 45.0 4.31e-01 80.2% 99.1%
3644862 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 3.22e-01 86.5% 81.3%
3506373 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.60 43.0 3.92e-01 77.1% 83.7%
3404871 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.60 47.0 4.49e-01 83.3% 97.3%
1558582 5092.1.1.6 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Fiber_head_BAdV-4 0.59 48.0 4.55e-01 87.5% 84.3%
3731231 220.1.1.214 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_C 0.59 45.0 4.25e-01 81.2% 99.1%
3490071 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.59 47.0 3.55e-01 86.5% 70.2%
1349153 5.1.11.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.58 46.0 2.95e-01 86.5% 25.7%
3264296 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 52.0 4.56e-01 100.0% 82.9%
3499652 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 44.0 3.25e-01 84.4% 56.1%
3890928 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.57 42.0 3.54e-01 81.2% 92.8%
5043146 3386.1.1.0 beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related 0.57 43.0 4.41e-01 87.5% 84.2%
4933430 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.57 45.0 3.79e-01 88.5% 92.0%
4847379 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 44.0 3.09e-01 86.5% 26.4%
3987705 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.56 41.0 4.17e-01 97.9% 77.9%
3583345 5.1.4.288 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.56 46.0 2.96e-01 88.5% 33.0%
4958749 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.56 45.0 3.72e-01 90.6% 90.5%
4952360 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 43.0 2.84e-01 95.8% 18.6%
4045121 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.56 34.0 3.72e-01 76.0% 73.8%
4926940 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.56 45.0 3.65e-01 86.5% 50.9%
4961380 4972.1.1.1 beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.55 38.0 3.45e-01 70.8% 79.3%
2697431 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.55 42.0 4.07e-01 81.2% 96.3%
4003669 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.55 45.0 2.91e-01 90.6% 25.6%
2797459 220.1.1.3 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1,Retinal 0.55 42.0 4.06e-01 83.3% 92.9%
None 0.55 42.0 3.66e-01 82.3% 70.7%
3281221 3435.1.1.5 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF6119 0.55 39.0 3.17e-01 100.0% 36.5%
3470252 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.55 41.0 3.97e-01 80.2% 92.7%
3867103 3417.1.1.1 a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.55 43.0 4.22e-01 85.4% 98.1%
4029311 5.1.4.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.54 44.0 2.98e-01 87.5% 25.9%
3908724 71.1.1.1 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin 0.54 44.0 3.63e-01 89.6% 98.3%
3573723 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.54 42.0 2.71e-01 84.4% 27.9%
3390746 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.54 47.0 3.88e-01 100.0% 58.4%
3873394 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 42.0 3.59e-01 83.3% 69.0%
3457581 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.54 44.0 3.07e-01 91.7% 54.2%
4182460 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 2.59e-01 92.7% 15.9%
3300916 5.1.4.231 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.54 44.0 3.09e-01 88.5% 33.3%
3412604 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.54 41.0 2.80e-01 81.2% 27.9%
3212364 5.1.5.27 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N 0.53 43.0 2.81e-01 88.5% 37.1%
5059920 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.53 40.0 4.17e-01 86.5% 86.7%
3962383 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 36.0 3.34e-01 70.8% 96.8%
4027923 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 2.70e-01 92.7% 23.3%
3803056 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 42.0 3.08e-01 88.5% 34.1%
4992208 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 46.0 3.38e-01 95.8% 86.0%
3383121 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 42.0 2.95e-01 87.5% 29.2%
4954762 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.52 44.0 4.07e-01 93.8% 88.0%
3441510 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 3.00e-01 85.4% 48.9%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.52 43.0 3.83e-01 100.0% 62.9%
3375375 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 46.0 3.23e-01 100.0% 96.8%
3192395 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.51 37.0 3.72e-01 80.2% 73.0%
4942549 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 44.0 3.21e-01 97.9% 88.8%
3924310 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.76e-01 85.4% 28.9%
3327098 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.51 41.0 2.96e-01 91.7% 58.4%
4028738 5.1.4.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.51 43.0 3.00e-01 94.8% 33.1%
5009292 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 44.0 3.25e-01 94.8% 90.0%