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IMGVR_UViG_3300027813_003954-3300027813-Ga0209090_100033745

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300027813_003954-3300027813-Ga0209090_100033745 ↗
Kingdom:: archaea

Quality

74.6 mean pLDDT

Cluster

View cluster (111 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 128-233

PDB

Domain cluster: rep: JM118__YP_238421__Macaca_fuscata_rhadinovirus__272551__D34-136

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00268.28 best	Ribonuc_red_sm	146.8	1.20e-42	100.0%	37.4%

D2 medium residues 234-249_310-368

PDB

Domain cluster: rep: ORF54__NP_733908__Callitrichine_gammaherpesvirus_3__106331__D213-276

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00268.28 best	Ribonuc_red_sm	57.1	2.70e-15	69.3%	18.9%

D3 medium residues 250-309

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00268.28 best	Ribonuc_red_sm	67.6	1.70e-18	100.0%	17.1%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1h0oA00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.99	95.0	5.82e-01	100.0%	20.8%
1yxrA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.82	57.0	5.25e-01	75.0%	58.1%
4h63K00	1.10.287.3490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.77	58.0	4.89e-01	80.0%	54.1%
2f93B00	1.10.287.470	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.76	53.0	5.72e-01	73.3%	86.3%
2xzmO02	1.10.287.10	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding	0.72	50.0	4.78e-01	80.0%	62.9%
4r42A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.71	64.0	4.49e-01	100.0%	40.1%
3behB01	1.20.120.540	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels	0.71	62.0	5.02e-01	100.0%	79.5%
4o92A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.67	53.0	4.47e-01	100.0%	50.5%
1gw5A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.66	47.0	2.71e-01	96.7%	7.7%
4ielA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.61	51.0	4.20e-01	100.0%	50.0%
1zl8B00	1.10.287.650	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain	0.59	43.0	4.46e-01	98.3%	88.9%
4mo7A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	48.0	3.71e-01	98.3%	83.1%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2722164	4275.1.1.6 ↗	alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube	0.76	53.0	3.71e-01	75.0%	23.6%
4945053	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.67	59.0	3.47e-01	100.0%	41.9%
3375617	192.5.1.30 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF641	0.63	54.0	4.97e-01	100.0%	73.8%
3603633	3997.1.1.1 ↗	alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel	0.59	51.0	3.57e-01	98.3%	30.5%