←Back to structures

IMGVR_UViG_3300027815_000166-3300027815-Ga0209726_1000692924

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300027815_000166-3300027815-Ga0209726_1000692924 ↗
Kingdom:: archaea

Quality

87.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3oqgA00	3.40.1440.50	Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease ›	0.66	39.0	2.75e-01	71.7%	19.9%
2uvaG01	1.20.1050.120	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.66	46.0	3.46e-01	73.3%	34.6%
5jeaD00	3.30.230.70	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain	0.64	48.0	3.33e-01	81.7%	26.8%
6scxC01	3.90.79.20	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase ›	0.61	41.0	2.99e-01	71.7%	69.2%
5hn3A00	3.40.718.10	Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase	0.57	39.0	2.43e-01	71.7%	20.5%
2rdpA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	52.0	3.88e-01	100.0%	50.0%
6fndA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	39.0	2.94e-01	93.3%	76.3%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4022955	3559.1.1.50 ↗	a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › PF28561	0.80	54.0	3.82e-01	70.0%	69.7%
4018260	141.1.1.8 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2	0.79	66.0	3.99e-01	90.0%	26.0%
4418050	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.79	53.0	3.18e-01	70.0%	27.5%
3921728	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.74	53.0	4.24e-01	75.0%	51.3%
3684015	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.73	52.0	4.33e-01	75.0%	53.0%
5065366	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.71	52.0	4.17e-01	80.0%	45.0%
5073431	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.70	58.0	3.40e-01	93.3%	23.4%
4030041	4207.1.1.0 ↗	alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21)	0.69	52.0	3.98e-01	80.0%	50.8%
3208120	633.23.1.22 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL	0.68	58.0	4.28e-01	93.3%	76.8%
3822451	101.33.1.1 ↗	alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain › DNMT1-RFD	0.67	45.0	3.46e-01	70.0%	70.8%
4996058	101.1.2.30 ↗	alpha arrays › HTH › HTH › winged helix domain › TrmB	0.63	51.0	4.18e-01	90.0%	95.7%
3968902	2006.1.6.15 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58	0.61	49.0	3.30e-01	90.0%	76.7%
4952489	3443.1.1.0 ↗	alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain	0.60	45.0	4.75e-01	80.0%	94.5%
3598536	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	43.0	2.45e-01	90.0%	9.4%