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IMGVR_UViG_3300027930_000001-3300027930-Ga0208153_10005190

Arc-Vir

IMGVR_UViG_3300027930_000001-3300027930-Ga0208153_10005190

Identity

Kingdom:
archaea

Quality

84.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-79
PDB
Domain cluster: rep: IMGVR_UViG_3300016781_000872-3300016781-Ga0182063_12070722__D702-796
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24517.3 best CBM96 26.1 9.30e-06 98.7% 45.1%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 38.0 3.69e-01 78.5% 50.0%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.62 34.0 3.83e-01 91.1% 68.3%
1dn0D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 3.90e-01 96.2% 60.6%
2d9oA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 36.0 3.39e-01 96.2% 49.0%
5fuiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 46.0 4.06e-01 97.5% 57.3%
4qawH03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 50.0 4.27e-01 100.0% 82.1%
5x7qA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 47.0 4.08e-01 94.9% 57.5%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.57 48.0 3.87e-01 97.5% 56.9%
2vngA00 2.60.120.1060 Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain 0.52 43.0 3.49e-01 97.5% 84.2%
4fixA01 3.90.550.60 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.52 44.0 2.87e-01 100.0% 80.6%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.64e-01 86.1% 95.5%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.51 36.0 3.17e-01 94.9% 47.2%
7ui8A01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.94e-01 94.9% 80.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3884573 11.1.1.318 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Rb_N 0.63 37.0 3.55e-01 79.7% 50.0%
3647098 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.61 38.0 3.20e-01 96.2% 35.7%
4943487 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 37.0 3.42e-01 86.1% 47.0%
4827386 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.60 41.0 3.60e-01 94.9% 46.0%
3264435 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 3.88e-01 100.0% 58.9%
4956917 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.60 42.0 3.83e-01 94.9% 55.2%
3475955 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 38.0 3.55e-01 94.9% 53.0%
3601399 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 50.0 3.76e-01 97.5% 60.0%
3341279 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 40.0 3.60e-01 96.2% 51.8%
4202622 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 39.0 2.72e-01 96.2% 22.0%
3474468 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 40.0 3.19e-01 96.2% 37.5%
3265108 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 39.0 3.67e-01 97.5% 59.0%
5067789 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.40e-01 94.9% 49.2%
3646000 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 38.0 3.27e-01 96.2% 47.2%
3996520 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.53 38.0 3.31e-01 94.9% 46.9%
3684241 3156.1.1.4 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase 0.53 38.0 2.91e-01 81.0% 51.4%
3251394 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.37e-01 96.2% 55.2%
3474265 11.1.1.230 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YBD 0.51 44.0 3.32e-01 100.0% 79.1%
3919041 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.51 37.0 3.25e-01 94.9% 49.6%
3910533 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 35.0 2.63e-01 73.4% 55.9%
3263950 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.50 39.0 3.34e-01 96.2% 50.4%
3580720 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.50 39.0 3.34e-01 96.2% 50.0%