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IMGVR_UViG_3300027931_000089-3300027931-Ga0208312_1002791
Arc-VirIMGVR_UViG_3300027931_000089-3300027931-Ga0208312_1002791
Identity
- Kingdom:
- archaea
Quality
88.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-99
Domain cluster:
rep: IMGVR_UViG_3300027937_000070-3300027937-Ga0208151_1007611__D3-81_87-93
D2
high
residues 103-168
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.65 | 50.0 | 4.35e-01 | 80.3% | 75.3% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.63 | 42.0 | 3.73e-01 | 71.2% | 48.9% |
| 4ipeB02 | 3.30.230.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.62 | 47.0 | 3.49e-01 | 80.3% | 67.3% |
| 1ui6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 51.0 | 3.73e-01 | 100.0% | 54.2% |
| 1zowA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.58 | 45.0 | 3.63e-01 | 87.9% | 84.2% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.56 | 48.0 | 4.41e-01 | 97.0% | 75.9% |
| 3spdA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.53 | 43.0 | 3.22e-01 | 97.0% | 41.0% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.53 | 38.0 | 2.92e-01 | 78.8% | 83.1% |
| 2krxA01 | 3.90.940.40 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › Protein CHLORORESPIRATORY REDUCTION 7 | 0.52 | 37.0 | 3.68e-01 | 93.9% | 70.8% |
| 1v4gA01 | 6.10.140.800 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 43.0 | 4.29e-01 | 93.9% | 98.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3236856 | 174.1.1.50 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7807 | 0.63 | 45.0 | 3.29e-01 | 74.2% | 86.9% |
| 3786419 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 51.0 | 4.59e-01 | 87.9% | 75.6% |
| 5018928 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.63 | 47.0 | 3.68e-01 | 78.8% | 94.1% |
| None | — | 0.62 | 47.0 | 3.35e-01 | 83.3% | 59.0% | |
| 3645751 | 633.26.1.0 ↗ | alpha bundles › Bromodomain-like › SidC lipid-binding domain › SidC lipid-binding domain | 0.62 | 43.0 | 3.33e-01 | 71.2% | 80.0% |
| 3376780 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.61 | 42.0 | 3.84e-01 | 90.9% | 54.1% |
| 3929962 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.61 | 55.0 | 3.66e-01 | 100.0% | 72.2% |
| 3515349 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.61 | 50.0 | 3.27e-01 | 90.9% | 67.6% |
| 4026266 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.60 | 46.0 | 3.12e-01 | 83.3% | 62.6% |
| 3485774 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 37.0 | 3.45e-01 | 87.9% | 49.4% |
| 3802814 | 2488.1.1.18 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DTW | 0.58 | 41.0 | 2.73e-01 | 77.3% | 64.5% |
| 3542036 | 601.1.1.134 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › TPR_Edg1 | 0.57 | 50.0 | 3.32e-01 | 100.0% | 75.9% |
| 3549831 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.56 | 40.0 | 2.95e-01 | 75.8% | 90.3% |
| 3675938 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.55 | 39.0 | 3.70e-01 | 74.2% | 66.3% |
| 3653085 | 2488.1.1.18 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DTW | 0.55 | 47.0 | 3.12e-01 | 98.5% | 66.3% |
| 5042767 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 38.0 | 3.33e-01 | 72.7% | 83.7% |
| 3279515 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.53 | 40.0 | 3.18e-01 | 84.8% | 74.7% |