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IMGVR_UViG_3300027932_000001-3300027932-Ga0208429_10000143

Arc-Vir

IMGVR_UViG_3300027932_000001-3300027932-Ga0208429_10000143

Identity

Kingdom:
archaea

Quality

85.9 mean pLDDT

Cluster

View cluster (19 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 72-247
PDB
Domain cluster: rep: EF120459.1__ABO40692.1__CL70701__00001__D93-237_257-288
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 56.0 5.04e-01 100.0% 91.8%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.60 27.0 3.84e-01 73.9% 92.2%
5yszA03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 39.0 4.33e-01 88.6% 87.8%
2fepA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 39.0 4.29e-01 89.2% 88.6%
2rgyA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 37.0 4.12e-01 86.4% 86.7%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.54 40.0 4.35e-01 99.4% 94.4%
3m9wA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 38.0 3.98e-01 90.9% 79.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961941 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 83.0 6.27e-01 100.0% 51.2%
5002475 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.84 80.0 6.20e-01 100.0% 54.4%
4946348 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.82 78.0 6.40e-01 100.0% 61.0%
4966168 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 78.0 6.05e-01 100.0% 51.9%
5021851 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.81 77.0 6.01e-01 100.0% 54.2%
4961486 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.81 77.0 5.77e-01 100.0% 56.9%
5053278 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.80 75.0 5.78e-01 100.0% 58.1%
4958777 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.79 76.0 6.03e-01 100.0% 57.2%
4958703 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.78 75.0 5.96e-01 100.0% 56.9%
4986643 2484.1.1.148 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_5 0.78 74.0 5.79e-01 100.0% 62.3%
5078190 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.76 72.0 6.20e-01 100.0% 70.9%
5082324 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.76 72.0 5.80e-01 100.0% 60.9%
3590948 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.74 53.0 4.65e-01 100.0% 50.6%
4992937 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.74 70.0 5.48e-01 100.0% 58.0%
5060820 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.72 68.0 4.89e-01 100.0% 55.2%
5020443 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.72 58.0 4.80e-01 100.0% 49.8%
5017703 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.72 67.0 5.42e-01 100.0% 63.1%
3515559 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.72 47.0 4.96e-01 89.2% 72.5%
5053144 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.71 63.0 5.06e-01 100.0% 50.3%
4958315 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.71 57.0 4.68e-01 100.0% 48.3%
5017700 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.71 67.0 5.41e-01 100.0% 70.8%
3509891 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.71 67.0 5.17e-01 100.0% 73.9%
5017696 2484.1.1.336 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4277 0.71 66.0 5.10e-01 100.0% 52.0%
4954372 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.69 57.0 4.76e-01 100.0% 52.6%
4961867 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.69 65.0 4.96e-01 100.0% 52.6%
4451157 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.69 54.0 4.91e-01 100.0% 62.2%
5040335 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.68 55.0 5.18e-01 100.0% 70.7%
3922382 2484.1.1.242 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rva_4 0.68 42.0 3.84e-01 100.0% 47.6%
3970986 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 54.0 4.37e-01 100.0% 46.2%
3568382 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.67 64.0 4.77e-01 100.0% 51.4%
4161288 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.66 43.0 4.81e-01 100.0% 84.4%
4564098 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.65 40.0 4.74e-01 100.0% 90.0%
3587330 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 60.0 4.54e-01 100.0% 59.0%
5011661 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.64 57.0 5.60e-01 100.0% 88.9%
5019257 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 60.0 5.01e-01 100.0% 73.1%
4956532 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.63 57.0 5.74e-01 100.0% 95.0%
None — 0.62 51.0 4.87e-01 100.0% 75.1%
3387142 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 35.0 3.44e-01 98.3% 52.1%
4958380 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.58 54.0 4.57e-01 100.0% 63.6%
5006321 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.58 52.0 4.21e-01 100.0% 52.0%
4057121 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.56 38.0 4.49e-01 94.3% 97.6%
3531250 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.55 51.0 3.84e-01 100.0% 89.5%
4967986 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 37.0 3.82e-01 100.0% 72.1%
4096635 2484.1.1.308 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TNP-like_RNaseH_N, TNP-like_RNaseH_C 0.54 50.0 4.14e-01 100.0% 61.3%
5064572 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.54 37.0 4.24e-01 100.0% 93.8%
3191394 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 38.0 4.41e-01 96.6% 98.5%
4278305 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.52 38.0 4.32e-01 98.3% 95.7%
D2 medium residues 1-59
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14210.11 best DUF4322 89.4 1.50e-25 78.0% 69.7%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 5.21e-01 89.8% 92.6%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 5.20e-01 96.6% 87.3%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 45.0 5.01e-01 79.7% 100.0%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.65 52.0 3.98e-01 89.8% 86.5%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 43.0 4.69e-01 72.9% 100.0%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 44.0 4.27e-01 83.1% 62.9%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.75e-01 88.1% 98.0%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.61e-01 100.0% 70.0%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.61 44.0 3.78e-01 83.1% 44.0%
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 42.0 4.00e-01 79.7% 58.7%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.55e-01 96.6% 75.0%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.59 47.0 4.19e-01 91.5% 62.2%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 43.0 4.41e-01 86.4% 87.3%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 46.0 4.17e-01 93.2% 64.4%
2l22A01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.57 40.0 3.51e-01 100.0% 48.4%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 40.0 3.83e-01 79.7% 66.2%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 43.0 4.23e-01 91.5% 85.1%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.54 44.0 3.23e-01 100.0% 79.4%
1v9dA01 1.20.58.630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 3.91e-01 96.6% 70.9%
5d0yA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.52 43.0 3.34e-01 100.0% 89.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4068904 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 54.0 5.95e-01 71.2% 97.7%
3469752 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.76 54.0 5.98e-01 78.0% 97.8%
3920862 101.1.1.221 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CCDC106 0.75 55.0 5.80e-01 84.7% 94.0%
4928270 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.73 51.0 5.59e-01 78.0% 97.8%
3984938 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.71 57.0 5.20e-01 91.5% 66.3%
3759371 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 60.0 5.35e-01 100.0% 79.8%
3793383 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.68 56.0 5.49e-01 94.9% 96.9%
3800176 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 5.04e-01 96.6% 77.6%
4626289 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.66 45.0 4.44e-01 72.9% 67.7%
4947436 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 51.0 5.29e-01 98.3% 94.5%
3404975 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.65 54.0 4.84e-01 98.3% 80.0%
4174590 101.1.2.61 ↗ alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.65 49.0 4.85e-01 86.4% 87.7%
5007028 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.65 46.0 4.72e-01 89.8% 83.6%
3737238 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.64 49.0 4.52e-01 84.7% 63.7%
3879118 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.64 46.0 4.71e-01 78.0% 83.6%
3985633 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.64 49.0 5.01e-01 89.8% 92.7%
4160122 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.63 51.0 3.94e-01 100.0% 38.0%
3191582 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.62 49.0 3.96e-01 91.5% 93.1%
3873677 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.62 47.0 4.54e-01 86.4% 72.9%
3930711 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 43.0 4.62e-01 79.7% 97.8%
3404418 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.61 47.0 4.51e-01 88.1% 72.9%
5070906 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 43.0 4.32e-01 76.3% 78.3%
3502247 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.61 44.0 4.45e-01 81.4% 80.0%
4926820 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.60 47.0 4.25e-01 91.5% 73.3%
4280807 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.60 46.0 4.70e-01 84.7% 92.7%
4997411 101.1.3.33 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 0.60 50.0 4.62e-01 98.3% 92.5%
4966195 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.60 48.0 4.65e-01 94.9% 78.6%
4534822 101.1.1.107 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.60 50.0 4.71e-01 98.3% 90.7%
3163613 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 48.0 4.66e-01 98.3% 81.4%
4944862 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 51.0 4.66e-01 100.0% 86.3%
4262428 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.59 48.0 3.16e-01 98.3% 37.7%
4973199 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.59 44.0 4.47e-01 89.8% 83.3%
3568862 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.59 43.0 4.29e-01 86.4% 76.9%
4933038 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.57 46.0 3.43e-01 96.6% 78.9%
3969080 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.57 43.0 4.45e-01 88.1% 90.9%
3554281 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.56 42.0 4.37e-01 83.1% 90.9%
5014197 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 4.07e-01 100.0% 65.3%
3375753 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.55 45.0 3.24e-01 93.2% 84.6%
5005181 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.29e-01 94.9% 77.1%
5038629 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.52 40.0 4.22e-01 91.5% 100.0%