←Back to structures
IMGVR_UViG_3300027932_000098-3300027932-Ga0208429_1000145
Arc-VirIMGVR_UViG_3300027932_000098-3300027932-Ga0208429_1000145
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-99
Domain cluster:
rep: NC_028883.1__YP_009206170.1__PHIMMP01_20051__00052__D2-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01402.28 best | RHH_1 | 31.9 | 1.20e-07 | 40.8% | 90.2% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.81 | 67.0 | 6.78e-01 | 100.0% | 87.5% |
| 7x4eA01 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.78 | 69.0 | 6.74e-01 | 96.9% | 96.3% |
| 4lrvF00 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.77 | 70.0 | 6.89e-01 | 99.0% | 100.0% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 38.0 | 4.84e-01 | 94.9% | 86.2% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.68 | 57.0 | 6.00e-01 | 96.9% | 100.0% |
| 2rh3A00 | 1.10.1220.190 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › VirC2, RHH domain | 0.67 | 61.0 | 5.67e-01 | 100.0% | 96.7% |
| 2jt1A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 32.0 | 3.70e-01 | 84.7% | 63.4% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 31.0 | 3.04e-01 | 86.7% | 42.2% |
| 7dklA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 34.0 | 3.62e-01 | 87.8% | 57.8% |
| 6n8eA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.60 | 54.0 | 3.91e-01 | 96.9% | 77.7% |
| 5du9B02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.58 | 52.0 | 3.97e-01 | 96.9% | 89.9% |
| 2jgpA03 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.58 | 51.0 | 3.87e-01 | 96.9% | 77.7% |
| 2vsqA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.58 | 52.0 | 3.87e-01 | 98.0% | 74.5% |
| 1l5aA03 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.57 | 51.0 | 4.01e-01 | 96.9% | 88.1% |
| 1pyvA00 | 1.10.10.910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP synthase, F1 beta subunit | 0.56 | 26.0 | 3.45e-01 | 85.7% | 81.1% |
| 2qksA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 30.0 | 2.99e-01 | 83.7% | 46.2% |
| 3fotA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.54 | 47.0 | 3.51e-01 | 98.0% | 81.5% |
| 4znmA01 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.54 | 47.0 | 3.46e-01 | 95.9% | 79.3% |
| 4e69A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 41.0 | 2.95e-01 | 82.7% | 50.0% |
| 5ja2A01 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.54 | 47.0 | 3.46e-01 | 96.9% | 74.7% |
| 7emyA03 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.53 | 47.0 | 3.44e-01 | 98.0% | 76.4% |
| 3tp2B02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 39.0 | 4.01e-01 | 100.0% | 82.1% |
| 5t3eB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.53 | 46.0 | 3.47e-01 | 96.9% | 83.1% |
| 1werA01 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.52 | 38.0 | 3.19e-01 | 77.6% | 92.0% |
| 7jtjA01 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.51 | 45.0 | 3.40e-01 | 98.0% | 82.6% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.51 | 38.0 | 3.59e-01 | 79.6% | 86.0% |
| 2iusA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 44.0 | 3.14e-01 | 96.9% | 85.0% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983836 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.87 | 82.0 | 7.79e-01 | 100.0% | 93.8% |
| 4373529 | 101.1.11.43 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › TraY | 0.87 | 81.0 | 8.06e-01 | 100.0% | 99.0% |
| 2625223 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.78 | 39.0 | 5.15e-01 | 80.6% | 87.3% |
| 5011682 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.78 | 54.0 | 6.33e-01 | 94.9% | 100.0% |
| 2874478 | 101.1.11.12 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DndE | 0.77 | 70.0 | 6.66e-01 | 99.0% | 92.1% |
| 1102657 | 101.1.11.12 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DndE | 0.77 | 69.0 | 6.73e-01 | 98.0% | 96.2% |
| 3196514 | 101.1.11.112 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › SGT1 | 0.69 | 62.0 | 5.48e-01 | 99.0% | 90.0% |
| 4998580 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 35.0 | 3.67e-01 | 83.7% | 53.3% |
| 3467706 | 101.1.11.112 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › SGT1 | 0.68 | 62.0 | 5.10e-01 | 100.0% | 66.9% |
| 154009 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.66 | 60.0 | 6.02e-01 | 98.0% | 100.0% |
| 5011468 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.64 | 34.0 | 3.13e-01 | 84.7% | 39.2% |
| 3744055 | 109.4.1.1129 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRAPPC9-Trs120 | 0.61 | 44.0 | 3.70e-01 | 75.5% | 93.9% |
| 5066982 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.61 | 40.0 | 3.53e-01 | 95.9% | 46.4% |
| 3974570 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.60 | 54.0 | 3.94e-01 | 96.9% | 80.0% |
| 1495355 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.59 | 52.0 | 3.77e-01 | 96.9% | 77.9% |
| 2492379 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.59 | 52.0 | 3.83e-01 | 96.9% | 79.6% |
| 1063734 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.58 | 52.0 | 3.84e-01 | 96.9% | 81.1% |
| 3287336 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.58 | 51.0 | 3.77e-01 | 96.9% | 78.8% |
| 3278104 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.58 | 51.0 | 3.79e-01 | 96.9% | 82.8% |
| 3955392 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.58 | 51.0 | 3.69e-01 | 96.9% | 76.0% |
| 1557236 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.58 | 52.0 | 3.79e-01 | 98.0% | 81.7% |
| 4200601 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.57 | 51.0 | 3.47e-01 | 96.9% | 60.9% |
| 4450486 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.57 | 52.0 | 3.75e-01 | 98.0% | 77.0% |
| 5035425 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.57 | 44.0 | 4.29e-01 | 79.6% | 97.1% |
| 4142114 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.57 | 50.0 | 3.67e-01 | 96.9% | 77.7% |
| 3955387 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.57 | 51.0 | 3.70e-01 | 98.0% | 75.6% |
| 3959467 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.57 | 51.0 | 3.54e-01 | 98.0% | 63.7% |
| 3284240 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.57 | 50.0 | 3.71e-01 | 96.9% | 78.4% |
| 4121769 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.57 | 51.0 | 3.74e-01 | 98.0% | 80.4% |
| 3641558 | 109.4.1.1188 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ORMDL | 0.57 | 41.0 | 3.70e-01 | 75.5% | 85.9% |
| 3279111 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.56 | 50.0 | 3.64e-01 | 98.0% | 75.9% |
| 4949916 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.56 | 48.0 | 3.47e-01 | 92.9% | 83.7% |
| 3464581 | 323.1.1.11 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › PapA_C | 0.56 | 49.0 | 3.53e-01 | 98.0% | 77.2% |
| 3743449 | 323.1.1.14 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AATase | 0.55 | 48.0 | 3.54e-01 | 95.9% | 84.2% |
| 3707503 | 101.1.10.20 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB_C_2 | 0.55 | 34.0 | 3.19e-01 | 100.0% | 48.0% |
| 4019581 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.55 | 48.0 | 3.44e-01 | 96.9% | 84.5% |
| 3658552 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 43.0 | 3.87e-01 | 95.9% | 60.7% |
| 3821499 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.55 | 48.0 | 3.63e-01 | 98.0% | 90.6% |
| 3443593 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 43.0 | 4.47e-01 | 95.9% | 91.1% |
| 4224592 | 323.1.1.11 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › PapA_C | 0.55 | 48.0 | 3.58e-01 | 96.9% | 82.4% |
| 4341425 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.55 | 48.0 | 3.53e-01 | 98.0% | 75.8% |
| 3290850 | 323.1.1.11 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › PapA_C | 0.55 | 48.0 | 3.56e-01 | 96.9% | 84.4% |
| 4422828 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.54 | 48.0 | 3.49e-01 | 96.9% | 77.4% |
| 3781299 | 323.1.1.14 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AATase | 0.54 | 47.0 | 3.54e-01 | 96.9% | 78.0% |
| 3783109 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.54 | 47.0 | 3.50e-01 | 96.9% | 84.6% |
| 3969612 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.53 | 46.0 | 3.46e-01 | 96.9% | 83.6% |
| 3786179 | 323.1.1.14 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AATase | 0.53 | 46.0 | 3.34e-01 | 95.9% | 84.3% |
| 4348588 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.53 | 46.0 | 3.19e-01 | 95.9% | 78.8% |
| 4289790 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.52 | 45.0 | 3.19e-01 | 96.9% | 82.5% |
| 3972942 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.52 | 45.0 | 3.34e-01 | 98.0% | 76.7% |
| 4309097 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.51 | 45.0 | 3.37e-01 | 96.9% | 82.4% |
| 3284349 | 101.1.2.735 ↗ | alpha arrays › HTH › HTH › winged helix domain › PspC | 0.50 | 36.0 | 3.78e-01 | 78.6% | 88.2% |
| 4990796 | 604.39.1.9 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 | 0.50 | 37.0 | 3.07e-01 | 80.6% | 90.3% |