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IMGVR_UViG_3300027933_000059-3300027933-Ga0208549_1032458

Arc-Vir

IMGVR_UViG_3300027933_000059-3300027933-Ga0208549_1032458

Identity

Kingdom:
archaea

Quality

75.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-68
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.42e-01 94.1% 82.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.29e-01 92.6% 81.0%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.71 52.0 5.66e-01 92.6% 96.4%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 5.15e-01 94.1% 83.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.82e-01 92.6% 75.4%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.68 44.0 5.20e-01 79.4% 100.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 5.01e-01 92.6% 76.8%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.67 53.0 4.56e-01 85.3% 75.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 4.88e-01 92.6% 77.3%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 49.0 4.65e-01 79.4% 69.5%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 48.0 5.29e-01 83.8% 98.1%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.65 42.0 4.69e-01 86.8% 93.8%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 47.0 3.95e-01 77.9% 72.4%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 46.0 4.08e-01 91.2% 52.4%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 46.0 3.92e-01 77.9% 89.2%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.63 50.0 3.99e-01 86.8% 44.4%
3mxtA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.62 46.0 4.08e-01 79.4% 98.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.72e-01 94.1% 76.0%
2f4mA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 43.0 4.82e-01 79.4% 98.0%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 44.0 3.68e-01 77.9% 70.4%
2x3fA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.60 44.0 3.95e-01 79.4% 98.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 46.0 4.53e-01 92.6% 76.0%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 3.61e-01 89.7% 50.0%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.60 45.0 3.92e-01 80.9% 90.4%
1atnD00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.60 47.0 3.12e-01 83.8% 39.5%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 40.0 3.31e-01 70.6% 71.4%
1ss4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 43.0 3.33e-01 85.3% 34.9%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 46.0 3.02e-01 85.3% 27.1%
1gesA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.57 42.0 3.59e-01 85.3% 47.8%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 3.15e-01 89.7% 57.3%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 44.0 3.02e-01 83.8% 99.1%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 50.0 3.13e-01 100.0% 31.0%
4q9cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.47e-01 77.9% 70.5%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 34.0 2.92e-01 91.2% 39.3%
5is8A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.54 43.0 3.16e-01 91.2% 47.7%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.54 48.0 2.99e-01 100.0% 27.9%
2lrsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 42.0 4.21e-01 88.2% 87.3%
1a90A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.58e-01 88.2% 87.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 40.0 3.04e-01 85.3% 54.2%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 42.0 2.73e-01 91.2% 42.3%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 36.0 3.04e-01 75.0% 44.3%
1f06A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 38.0 3.09e-01 83.8% 99.3%
3tebB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.50 38.0 2.59e-01 82.4% 53.8%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.50 46.0 2.80e-01 100.0% 24.5%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 58.0 6.36e-01 83.8% 100.0%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.75 54.0 5.70e-01 92.6% 88.1%
5052256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.10e-01 92.6% 60.0%
5010547 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.73 57.0 5.64e-01 82.4% 95.7%
3588379 375.1.1.90 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ISL3 0.73 53.0 5.41e-01 77.9% 84.6%
3696153 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.71 58.0 3.68e-01 88.2% 56.8%
3473981 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.70 60.0 4.84e-01 92.6% 62.4%
4946160 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.68 50.0 5.30e-01 80.9% 95.0%
3184389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 4.18e-01 92.6% 46.3%
4966947 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.67 58.0 3.71e-01 98.5% 60.6%
3531702 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.66 46.0 3.66e-01 73.5% 75.7%
4965032 375.1.1.343 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 0.65 48.0 5.13e-01 88.2% 100.0%
5072764 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 44.0 4.88e-01 86.8% 98.0%
4950639 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 3.79e-01 86.8% 86.6%
5065631 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.63 44.0 4.50e-01 83.8% 76.9%
4943931 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 51.0 4.50e-01 89.7% 91.0%
5041097 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.62 43.0 4.67e-01 88.2% 89.1%
4616279 375.1.1.95 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 0.61 45.0 4.64e-01 88.2% 86.2%
3399403 206.1.1.88 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL, DUF1679 0.60 49.0 2.95e-01 88.2% 28.4%
5076824 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 51.0 3.21e-01 92.6% 29.3%
5021275 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 45.0 3.87e-01 79.4% 70.9%
4221476 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.60 51.0 3.63e-01 94.1% 94.3%
4641929 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.60 49.0 3.99e-01 88.2% 52.8%
3399804 206.1.1.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.60 47.0 2.99e-01 88.2% 29.1%
3789364 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 52.0 3.25e-01 97.1% 43.6%
4986209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 41.0 3.49e-01 85.3% 40.3%
3797649 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 47.0 4.07e-01 88.2% 60.9%
4123449 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.59 48.0 4.49e-01 91.2% 70.6%
3658408 4325.1.1.13 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.59 43.0 4.25e-01 79.4% 90.7%
3606396 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 49.0 3.04e-01 89.7% 28.9%
3493824 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 50.0 3.25e-01 98.5% 67.4%
3285355 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 4.40e-01 80.9% 98.6%
3588488 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 50.0 4.49e-01 94.1% 97.9%
3736088 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 49.0 4.25e-01 94.1% 92.4%
3249998 5.1.5.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FG-GAP_3 0.57 49.0 3.18e-01 97.1% 54.6%
3990973 2484.1.1.107 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.57 40.0 3.15e-01 76.5% 37.5%
3367557 4099.1.1.41 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › FmiP_Thoc5 0.56 41.0 3.34e-01 95.6% 40.0%
3998245 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 40.0 3.33e-01 76.5% 48.0%
5075730 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.55 44.0 3.74e-01 89.7% 66.1%
4100965 5.1.4.291 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_1, Glyoxal_oxid_N 0.54 45.0 2.87e-01 97.1% 65.9%
5066585 881.2.1.0 ↗ a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.54 43.0 3.51e-01 88.2% 90.8%
3587515 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.54 44.0 3.64e-01 89.7% 55.8%
3178078 220.1.1.70 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.53 40.0 3.12e-01 83.8% 40.0%
3268229 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.61e-01 89.7% 55.2%
3924799 2484.1.1.107 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.52 38.0 2.93e-01 76.5% 37.5%
3999173 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 34.0 3.08e-01 94.1% 47.4%
4358798 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 39.0 3.86e-01 82.4% 86.7%
3536651 5.1.3.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 0.51 43.0 2.85e-01 97.1% 61.3%
3492539 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 40.0 2.95e-01 85.3% 45.1%
4986251 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.50 33.0 3.12e-01 91.2% 52.2%