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IMGVR_UViG_3300027968_000135-3300027968-Ga0209061_100345717
Arc-VirIMGVR_UViG_3300027968_000135-3300027968-Ga0209061_100345717
Identity
- Kingdom:
- archaea
Quality
61.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-88
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.67 | 49.0 | 4.68e-01 | 76.9% | 67.4% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.67 | 44.0 | 4.47e-01 | 75.6% | 68.8% |
| 6ka3A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.66 | 46.0 | 3.71e-01 | 73.1% | 57.1% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.66 | 45.0 | 3.67e-01 | 73.1% | 38.7% |
| 3cmbA00 | 2.40.400.10 | Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like | 0.64 | 57.0 | 3.96e-01 | 100.0% | 87.5% |
| 1bywA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 47.0 | 4.18e-01 | 79.5% | 79.1% |
| 3oblA00 | 2.40.128.450 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 42.0 | 3.58e-01 | 79.5% | 41.7% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 43.0 | 3.66e-01 | 78.2% | 54.0% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 40.0 | 3.18e-01 | 73.1% | 44.6% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 41.0 | 3.91e-01 | 75.6% | 85.3% |
| 3rt0C00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 39.0 | 3.08e-01 | 71.8% | 32.6% |
| 2bmoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 3.08e-01 | 74.4% | 46.4% |
| 8bddA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.57 | 43.0 | 2.86e-01 | 83.3% | 75.0% |
| 2ckfB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 3.11e-01 | 73.1% | 51.2% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 3.45e-01 | 78.2% | 49.1% |
| 4nzjA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 38.0 | 3.71e-01 | 71.8% | 96.6% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 39.0 | 3.27e-01 | 100.0% | 41.8% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.55 | 41.0 | 3.19e-01 | 79.5% | 95.4% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 43.0 | 4.07e-01 | 91.0% | 85.0% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 39.0 | 3.50e-01 | 78.2% | 76.1% |
| 2hv2A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 37.0 | 3.52e-01 | 71.8% | 92.6% |
| 2v0uA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 44.0 | 3.70e-01 | 93.6% | 65.1% |
| 3a5vA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 38.0 | 3.47e-01 | 73.1% | 93.9% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 41.0 | 3.56e-01 | 83.3% | 87.0% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 36.0 | 2.96e-01 | 70.5% | 58.2% |
| 2wsaA00 | 3.40.630.170 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.52 | 36.0 | 2.34e-01 | 73.1% | 32.4% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.52 | 41.0 | 3.51e-01 | 91.0% | 59.2% |
| 3cc1A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 36.0 | 3.48e-01 | 71.8% | 96.6% |
| 7zgmA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 43.0 | 3.07e-01 | 93.6% | 73.8% |
| 4mb7A01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.51 | 40.0 | 3.48e-01 | 88.5% | 69.0% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.51 | 38.0 | 3.37e-01 | 85.9% | 91.5% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.48e-01 | 91.0% | 60.3% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 34.0 | 2.86e-01 | 70.5% | 38.9% |
| 2zxrA01 | 2.40.50.460 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 37.0 | 2.99e-01 | 79.5% | 65.8% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.50 | 37.0 | 3.03e-01 | 82.1% | 99.4% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3503098 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.73 | 52.0 | 4.85e-01 | 74.4% | 94.7% |
| 3223253 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.65 | 50.0 | 4.28e-01 | 83.3% | 54.4% |
| 3233965 | 59.1.1.9 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF | 0.65 | 48.0 | 4.23e-01 | 80.8% | 65.8% |
| 4149046 | 243.3.1.60 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5385 | 0.62 | 49.0 | 4.69e-01 | 85.9% | 81.1% |
| 3176757 | 243.1.1.50 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind | 0.62 | 44.0 | 3.36e-01 | 75.6% | 39.4% |
| 3939294 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 51.0 | 3.34e-01 | 98.7% | 35.3% |
| 3852438 | 883.1.1.24 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF29321 | 0.60 | 43.0 | 3.32e-01 | 75.6% | 41.1% |
| 3679206 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.60 | 49.0 | 3.14e-01 | 93.6% | 40.5% |
| 3193892 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.59 | 47.0 | 2.66e-01 | 88.5% | 9.6% |
| 3611566 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 50.0 | 3.16e-01 | 93.6% | 35.0% |
| 3196407 | 7026.1.1.5 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD | 0.59 | 43.0 | 3.10e-01 | 79.5% | 54.8% |
| 3322788 | 3270.1.1.1 ↗ | a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 | 0.58 | 48.0 | 4.46e-01 | 92.3% | 93.0% |
| 3200942 | 5.1.4.263 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_2nd | 0.58 | 46.0 | 3.05e-01 | 88.5% | 25.9% |
| 3489971 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 49.0 | 4.27e-01 | 93.6% | 82.5% |
| 3736890 | 5.1.5.236 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR3_1st | 0.58 | 45.0 | 2.65e-01 | 87.2% | 11.7% |
| 3576905 | 11.1.1.1009 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26432 | 0.58 | 39.0 | 2.37e-01 | 78.2% | 10.3% |
| 3406375 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.58 | 48.0 | 3.82e-01 | 98.7% | 58.3% |
| 3924732 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 46.0 | 3.53e-01 | 88.5% | 89.5% |
| 3713176 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.57 | 50.0 | 3.23e-01 | 98.7% | 40.0% |
| 3452171 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.57 | 44.0 | 3.27e-01 | 87.2% | 72.4% |
| 4949232 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 43.0 | 3.53e-01 | 83.3% | 50.6% |
| 3924081 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.56 | 41.0 | 3.36e-01 | 75.6% | 67.1% |
| 3788481 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 47.0 | 3.05e-01 | 97.4% | 27.5% |
| 4342567 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.56 | 39.0 | 3.52e-01 | 74.4% | 84.3% |
| 3583142 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 42.0 | 3.32e-01 | 85.9% | 90.0% |
| 3198929 | 331.4.1.3 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor | 0.55 | 41.0 | 3.47e-01 | 79.5% | 66.7% |
| 5058885 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 48.0 | 3.87e-01 | 100.0% | 55.6% |
| 4418514 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 47.0 | 2.91e-01 | 96.2% | 32.9% |
| 3990325 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 41.0 | 3.29e-01 | 82.1% | 87.6% |
| 4003909 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.55 | 38.0 | 3.03e-01 | 73.1% | 57.1% |
| 3520733 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.54 | 46.0 | 2.95e-01 | 93.6% | 37.9% |
| 3314292 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 47.0 | 3.15e-01 | 100.0% | 51.1% |
| 4018136 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.54 | 45.0 | 2.82e-01 | 96.2% | 23.5% |
| 4174055 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.53 | 40.0 | 3.15e-01 | 83.3% | 58.7% |
| 3581282 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.53 | 38.0 | 2.38e-01 | 75.6% | 19.0% |
| 4018634 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.53 | 36.0 | 3.20e-01 | 70.5% | 80.9% |
| 3737743 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.53 | 44.0 | 4.10e-01 | 96.2% | 89.0% |
| 4992590 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.53 | 45.0 | 3.56e-01 | 100.0% | 58.9% |
| 3954034 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.52 | 37.0 | 2.82e-01 | 75.6% | 31.3% |
| 3628420 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.52 | 37.0 | 2.71e-01 | 75.6% | 40.0% |
| 4428763 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.51 | 39.0 | 2.83e-01 | 83.3% | 80.8% |