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IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_1000034315

Arc-Vir

IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_1000034315

Quality

83.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-146
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.78 40.0 3.87e-01 91.1% 45.1%
2x6nD00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.74 50.0 3.98e-01 70.0% 41.6%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.72 50.0 4.66e-01 72.2% 88.4%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 45.0 3.45e-01 71.1% 40.5%
2hqsA01 3.40.50.10070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain 0.66 46.0 3.93e-01 72.2% 81.0%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 48.0 3.49e-01 77.8% 38.5%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 45.0 4.42e-01 72.2% 85.0%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.65 44.0 3.29e-01 70.0% 39.5%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.63 44.0 3.24e-01 72.2% 36.2%
7vbnL01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.63 44.0 4.40e-01 73.3% 85.3%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.62 44.0 3.24e-01 73.3% 41.1%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 39.0 3.74e-01 95.6% 54.3%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.61 32.0 4.31e-01 82.2% 100.0%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.61 44.0 3.28e-01 76.7% 45.0%
1khdD02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.61 42.0 3.16e-01 72.2% 48.0%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.60 32.0 3.11e-01 80.0% 43.7%
1jlcB03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 29.0 2.54e-01 77.8% 30.8%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 40.0 3.66e-01 92.2% 51.7%
4kreA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 49.0 3.54e-01 90.0% 92.2%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.59 49.0 4.40e-01 90.0% 80.0%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 40.0 3.52e-01 96.7% 47.8%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.57 43.0 3.43e-01 80.0% 87.3%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.57 39.0 3.57e-01 70.0% 79.0%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 44.0 3.61e-01 84.4% 64.3%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 39.0 4.32e-01 73.3% 100.0%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 30.0 3.93e-01 90.0% 100.0%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 35.0 3.21e-01 98.9% 48.7%
1u7pD00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 43.0 3.63e-01 88.9% 71.4%
2qkbA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 42.0 3.63e-01 86.7% 73.0%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 3.21e-01 92.2% 35.0%
3hkxA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.53 41.0 3.01e-01 84.4% 54.8%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 44.0 2.99e-01 93.3% 48.0%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 43.0 4.02e-01 90.0% 100.0%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 45.0 3.17e-01 97.8% 42.1%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.89e-01 93.3% 26.0%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.51 37.0 3.47e-01 77.8% 100.0%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 36.0 3.11e-01 74.4% 85.8%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 32.0 3.48e-01 72.2% 77.3%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.50 39.0 3.53e-01 85.6% 61.7%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 35.0 3.02e-01 71.1% 65.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947062 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.72 52.0 4.01e-01 74.4% 40.5%
3980553 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.72 54.0 5.12e-01 78.9% 78.1%
3934731 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.71 55.0 4.45e-01 82.2% 46.5%
3986500 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.70 53.0 4.45e-01 80.0% 58.7%
3988981 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.66 49.0 3.84e-01 76.7% 52.2%
4603449 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.66 46.0 3.81e-01 72.2% 48.1%
3787139 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 52.0 4.18e-01 86.7% 48.0%
3801858 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.64 38.0 4.54e-01 72.2% 88.3%
3311061 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 45.0 3.30e-01 72.2% 32.3%
3648289 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 45.0 2.78e-01 72.2% 16.4%
3241917 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 45.0 3.12e-01 72.2% 51.9%
4986263 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 50.0 4.11e-01 82.2% 99.4%
3301688 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 44.0 2.76e-01 71.1% 16.8%
3681567 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 44.0 2.78e-01 72.2% 16.8%
3463169 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 43.0 2.70e-01 71.1% 16.2%
4997648 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.63 36.0 4.60e-01 91.1% 100.0%
4939931 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 44.0 3.76e-01 76.7% 44.0%
4108520 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.63 44.0 3.85e-01 72.2% 58.5%
3743318 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.62 50.0 3.92e-01 93.3% 38.6%
3429580 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 45.0 3.78e-01 76.7% 75.0%
3306744 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 43.0 2.65e-01 71.1% 16.2%
2410563 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 51.0 4.34e-01 93.3% 91.8%
3551612 2004.1.1.100 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NTPase_1 0.62 51.0 4.00e-01 90.0% 55.8%
3531937 2484.1.1.317 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF28925 0.61 43.0 2.71e-01 73.3% 18.0%
3830643 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.61 42.0 4.27e-01 72.2% 90.0%
3804501 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 42.0 3.05e-01 71.1% 29.2%
4364336 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.61 37.0 4.49e-01 98.9% 100.0%
3381332 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.60 41.0 2.67e-01 71.1% 19.8%
4130494 2484.1.1.55 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.60 44.0 3.63e-01 77.8% 60.0%
3329729 5104.1.1.3 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.59 41.0 3.55e-01 72.2% 97.9%
2574473 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 29.0 3.85e-01 78.9% 97.6%
3938170 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.59 46.0 3.97e-01 86.7% 74.7%
4994320 2004.1.1.100 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NTPase_1 0.59 48.0 3.87e-01 92.2% 55.6%
5019748 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 40.0 3.68e-01 70.0% 67.5%
5055106 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 44.0 3.51e-01 83.3% 41.2%
4990926 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.57 33.0 4.11e-01 94.4% 100.0%
5000727 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 35.0 4.24e-01 97.8% 100.0%
4210916 2484.1.1.55 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.57 43.0 3.43e-01 83.3% 58.5%
5069904 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.56 45.0 4.01e-01 91.1% 71.4%
4927363 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.55 37.0 3.94e-01 75.6% 81.3%
4652181 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.55 40.0 3.44e-01 80.0% 49.4%
4994111 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.55 34.0 4.09e-01 94.4% 100.0%
3904071 214.1.1.11 a+b two layers › SH2 › SH2 › SH2 › PF27628 0.54 43.0 4.00e-01 87.8% 74.2%
4959885 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.54 38.0 3.95e-01 73.3% 100.0%
4985869 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.53 34.0 3.47e-01 93.3% 65.2%
3638497 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.53 44.0 3.61e-01 97.8% 73.0%
3740383 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.52 44.0 2.99e-01 95.6% 29.9%
4940485 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 45.0 4.10e-01 98.9% 96.8%
3637283 5.1.4.441 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin-link 0.52 43.0 2.93e-01 93.3% 49.2%
4396772 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 36.0 3.07e-01 71.1% 56.7%
3391727 5.1.4.156 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.52 42.0 2.62e-01 86.7% 29.3%
3889557 378.1.1.1 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.52 38.0 2.94e-01 76.7% 74.0%
3500262 7579.1.1.3 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.51 44.0 2.99e-01 96.7% 36.9%
3623902 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.50 43.0 3.51e-01 92.2% 68.1%
D2 medium residues 1-54
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ydeB00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.54 40.0 2.45e-01 83.3% 25.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4354193 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.53 38.0 2.75e-01 79.6% 63.4%