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IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_10000343215
Arc-VirIMGVR_UViG_3300028048_000061-3300028048-Ga0256405_10000343215
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-93
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 58.0 | 5.65e-01 | 100.0% | 69.7% |
| 2q9rA01 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.78 | 56.0 | 4.04e-01 | 90.0% | 27.2% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.78 | 48.0 | 4.78e-01 | 100.0% | 60.6% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.78 | 43.0 | 4.18e-01 | 90.0% | 49.4% |
| 2qtqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 40.0 | 2.89e-01 | 84.3% | 21.8% |
| 3uarA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 41.0 | 3.55e-01 | 94.3% | 41.1% |
| 6ircA01 | 1.20.1230.10 | Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain | 0.61 | 52.0 | 3.81e-01 | 100.0% | 34.0% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.60 | 39.0 | 4.19e-01 | 84.3% | 75.4% |
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 36.0 | 3.18e-01 | 80.0% | 39.8% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 29.0 | 3.27e-01 | 81.4% | 60.7% |
| 3c7jA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.58 | 43.0 | 3.49e-01 | 81.4% | 97.3% |
| 2ve7A02 | 6.10.250.1950 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 46.0 | 3.97e-01 | 94.3% | 53.3% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 37.0 | 3.01e-01 | 72.9% | 34.8% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.52 | 45.0 | 3.95e-01 | 95.7% | 95.1% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4210734 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.81 | 54.0 | 4.63e-01 | 98.6% | 45.7% |
| 195684 | 3813.1.1.1 ↗ | alpha bundles › DUF416 › DUF416 › DUF416 › DUF416 | 0.78 | 56.0 | 4.04e-01 | 90.0% | 27.2% |
| 3770770 | 601.1.2.92 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TMEM107 | 0.77 | 50.0 | 4.06e-01 | 100.0% | 37.6% |
| 3602986 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.76 | 45.0 | 4.04e-01 | 100.0% | 43.2% |
| 3246869 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.70 | 51.0 | 3.55e-01 | 98.6% | 22.9% |
| 4547657 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.69 | 62.0 | 4.22e-01 | 100.0% | 44.8% |
| 3487499 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 44.0 | 3.59e-01 | 91.4% | 34.1% |
| 3619654 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 0.65 | 56.0 | 4.29e-01 | 100.0% | 42.9% |
| 3255932 | 5001.1.1.122 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PF27754 | 0.65 | 55.0 | 3.66e-01 | 97.1% | 23.1% |
| 4224436 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 48.0 | 3.25e-01 | 91.4% | 22.3% |
| 5027994 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.61 | 53.0 | 4.07e-01 | 97.1% | 53.3% |
| 3907307 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.61 | 44.0 | 3.93e-01 | 77.1% | 92.0% |
| 3419760 | 150.7.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › CGLD27-like | 0.58 | 44.0 | 4.09e-01 | 100.0% | 65.9% |
| 3493391 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 41.0 | 3.62e-01 | 90.0% | 49.1% |
| 3785892 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.56 | 46.0 | 3.28e-01 | 95.7% | 70.6% |
| 3738224 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.54 | 42.0 | 4.12e-01 | 88.6% | 81.2% |
| 3422854 | 3324.1.1.2 ↗ | extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases | 0.54 | 44.0 | 3.62e-01 | 90.0% | 48.5% |
| 3174920 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.53 | 45.0 | 4.20e-01 | 91.4% | 87.1% |