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IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_10000343247
Arc-VirIMGVR_UViG_3300028048_000061-3300028048-Ga0256405_10000343247
Identity
- Kingdom:
- archaea
Quality
65.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-26_38-84
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.67 | 58.0 | 3.93e-01 | 100.0% | 52.0% |
| 6axgA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.66 | 51.0 | 4.78e-01 | 84.5% | 84.3% |
| 4q20A01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.64 | 35.0 | 3.33e-01 | 87.3% | 43.9% |
| 5gmkZ01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 54.0 | 3.84e-01 | 97.2% | 47.8% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.62 | 42.0 | 3.96e-01 | 70.4% | 65.2% |
| 4l3uA00 | 1.20.1480.40 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 | 0.62 | 49.0 | 4.10e-01 | 85.9% | 89.4% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 41.0 | 4.11e-01 | 71.8% | 100.0% |
| 3t5qG01 | 1.10.150.550 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain | 0.59 | 43.0 | 3.77e-01 | 76.1% | 91.3% |
| 4akrA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.58 | 44.0 | 4.00e-01 | 87.3% | 80.2% |
| 1vw4L02 | 1.10.246.170 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.57 | 43.0 | 4.06e-01 | 80.3% | 85.9% |
| 4ii2A02 | 3.40.50.12550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 | 0.56 | 42.0 | 3.00e-01 | 80.3% | 83.9% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.56 | 35.0 | 3.45e-01 | 71.8% | 59.5% |
| 2c2lA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 46.0 | 3.83e-01 | 97.2% | 78.9% |
| 2xrhA00 | 1.20.120.1430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle | 0.54 | 43.0 | 3.81e-01 | 85.9% | 63.0% |
| 6todA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 40.0 | 2.67e-01 | 84.5% | 71.1% |
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.51 | 38.0 | 3.44e-01 | 78.9% | 80.4% |
| 2vdwG00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 41.0 | 2.85e-01 | 91.5% | 36.6% |
| 3fhnA01 | 6.10.280.210 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A | 0.51 | 40.0 | 3.15e-01 | 94.4% | 50.0% |
| 5tgtA02 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.50 | 39.0 | 3.28e-01 | 84.5% | 97.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4012956 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 57.0 | 3.17e-01 | 83.1% | 10.2% |
| 3604599 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.71 | 55.0 | 4.83e-01 | 81.7% | 63.0% |
| 3849992 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.70 | 48.0 | 4.31e-01 | 71.8% | 89.0% |
| 3742618 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.69 | 37.0 | 3.14e-01 | 85.9% | 34.3% |
| 4095580 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.68 | 46.0 | 4.22e-01 | 70.4% | 96.8% |
| 2501268 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.67 | 51.0 | 4.32e-01 | 83.1% | 61.7% |
| 5038830 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.65 | 50.0 | 4.54e-01 | 84.5% | 75.0% |
| 3553046 | 109.4.1.875 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_1st | 0.65 | 49.0 | 3.81e-01 | 80.3% | 74.8% |
| 3620516 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 46.0 | 3.98e-01 | 74.6% | 63.6% |
| 3501429 | 109.4.1.171 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3snoRNP10 | 0.62 | 50.0 | 3.35e-01 | 90.1% | 36.1% |
| 3566571 | 109.25.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A | 0.62 | 42.0 | 4.02e-01 | 70.4% | 83.5% |
| 3884681 | 292.2.1.10 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34-like_N | 0.62 | 45.0 | 4.11e-01 | 77.5% | 88.4% |
| 3869692 | 109.4.1.3360 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GoLoco, TPR_7, TPR_10, TPR_12 | 0.61 | 52.0 | 3.11e-01 | 97.2% | 31.1% |
| 3194115 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 51.0 | 3.00e-01 | 95.8% | 32.1% |
| 3458940 | 101.1.10.38 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF247 | 0.58 | 42.0 | 3.41e-01 | 77.5% | 98.6% |
| 3375382 | 3832.1.1.2 ↗ | alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › PF25968 | 0.53 | 40.0 | 2.91e-01 | 84.5% | 60.9% |