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IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_1000034337

Arc-Vir

IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_1000034337

Identity

Kingdom:
archaea

Quality

53.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 92-260
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.76 36.0 3.70e-01 92.3% 47.0%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.72 38.0 3.83e-01 97.6% 51.1%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.72 38.0 5.08e-01 92.3% 93.7%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.65 31.0 4.00e-01 85.8% 79.6%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.64 36.0 4.16e-01 98.8% 74.4%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.61 24.0 3.63e-01 72.2% 86.8%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 26.0 3.52e-01 82.8% 76.7%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.59 23.0 3.56e-01 71.6% 90.6%
2q7aA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 31.0 3.26e-01 87.0% 55.9%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 25.0 3.38e-01 85.2% 78.0%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 31.0 3.82e-01 91.7% 82.9%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.57 23.0 3.12e-01 79.3% 69.7%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 24.0 3.36e-01 81.7% 89.0%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.53 37.0 3.84e-01 91.7% 75.0%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 24.0 3.15e-01 86.4% 77.5%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 24.0 2.98e-01 80.5% 67.0%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 33.0 3.53e-01 91.1% 73.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981227 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.81 37.0 5.62e-01 95.9% 100.0%
4647050 1.1.13.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.80 37.0 5.34e-01 91.7% 93.8%
5002753 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 39.0 5.50e-01 94.1% 97.6%
4957568 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 37.0 5.31e-01 98.2% 97.6%
3968713 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.71 35.0 4.75e-01 89.3% 88.9%
3603127 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 36.0 4.84e-01 89.3% 91.1%
3972305 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 35.0 4.82e-01 89.9% 92.2%
4888819 1.1.13.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_1 0.70 39.0 4.74e-01 92.3% 82.9%
3966429 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.70 35.0 4.82e-01 89.9% 92.2%
1914511 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.70 33.0 3.82e-01 89.9% 59.8%
3970827 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 35.0 4.84e-01 86.4% 96.5%
4393593 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.69 35.0 4.59e-01 85.8% 87.4%
3944430 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 39.0 4.89e-01 95.9% 90.5%
3943689 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 39.0 4.83e-01 98.8% 88.2%
4094235 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 33.0 3.83e-01 89.9% 63.2%
5002662 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 39.0 5.04e-01 99.4% 98.0%
4319057 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 32.0 3.83e-01 91.1% 67.0%
3511358 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 38.0 4.85e-01 99.4% 96.0%
4929587 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 34.0 4.55e-01 89.3% 94.4%
3943691 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.65 34.0 4.47e-01 85.2% 90.5%
3256920 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 36.0 4.15e-01 89.9% 76.0%
4247994 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.63 35.0 4.51e-01 86.4% 93.0%
4036849 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 32.0 3.59e-01 91.1% 62.4%
3941539 1.1.13.40 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.62 37.0 4.67e-01 84.0% 96.2%
3969448 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 37.0 4.69e-01 84.0% 98.1%
5002750 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 35.0 4.37e-01 93.5% 91.4%
4538400 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 31.0 3.50e-01 91.1% 64.6%
4810019 1.1.13.57 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.58 33.0 3.97e-01 91.7% 83.6%
4401392 872.1.1.2 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin 0.57 23.0 3.48e-01 72.2% 90.8%
5082881 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 37.0 4.30e-01 91.7% 90.4%
4346339 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.55 22.0 3.05e-01 76.9% 73.8%
2674670 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.54 37.0 3.73e-01 92.3% 68.0%
5039693 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.53 22.0 2.94e-01 75.1% 68.5%
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.53 38.0 3.85e-01 92.3% 73.8%
4965043 328.5.1.1 ↗ a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.53 24.0 3.24e-01 86.4% 84.6%
3969384 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 37.0 3.80e-01 89.3% 76.9%
4889790 3071.1.1.7 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.51 43.0 4.35e-01 91.7% 95.8%
5031633 304.8.1.118 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TruB_C_2 0.51 29.0 3.05e-01 79.3% 60.7%
D2 high residues 329-409
PDB