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IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_1000034347
Arc-VirIMGVR_UViG_3300028048_000061-3300028048-Ga0256405_1000034347
Identity
- Kingdom:
- archaea
Quality
78.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-166
Domain cluster:
rep: SRR1747035_scaffold_2_prodigal-single.1__X__X__00240__D89-247
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13306.13 best | LRR_5 | 69.1 | 4.80e-19 | 69.3% | 81.1% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fs7A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.79 | 69.0 | 5.05e-01 | 89.8% | 43.1% |
| 4fd0A02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.78 | 66.0 | 5.29e-01 | 88.0% | 54.0% |
| 4gt6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.76 | 68.0 | 5.00e-01 | 92.2% | 46.2% |
| 4cp6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.75 | 66.0 | 4.81e-01 | 92.2% | 43.2% |
| 4h09D00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.75 | 66.0 | 4.90e-01 | 92.2% | 46.4% |
| 4ojuA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.75 | 54.0 | 5.86e-01 | 74.1% | 93.7% |
| 3sb4A02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.72 | 60.0 | 6.26e-01 | 99.4% | 94.1% |
| 4bv4R00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.70 | 57.0 | 4.13e-01 | 85.5% | 40.0% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 33.0 | 4.18e-01 | 78.9% | 96.0% |
| 4g6iC02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 24.0 | 3.09e-01 | 72.3% | 68.1% |
| 2vo8A00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 30.0 | 3.38e-01 | 71.7% | 68.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4148563 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.80 | 70.0 | 4.84e-01 | 89.8% | 35.2% |
| 1281087 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.79 | 69.0 | 5.05e-01 | 89.8% | 43.1% |
| 5033803 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.78 | 67.0 | 5.99e-01 | 88.6% | 77.7% |
| 1600195 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.77 | 66.0 | 6.03e-01 | 88.0% | 77.9% |
| 2576217 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.77 | 66.0 | 5.97e-01 | 89.2% | 79.9% |
| 1501314 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.75 | 66.0 | 4.81e-01 | 92.2% | 43.2% |
| 1295939 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.75 | 66.0 | 4.90e-01 | 92.2% | 46.4% |
| 1297113 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.74 | 54.0 | 5.84e-01 | 74.7% | 93.7% |
| 3325571 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.69 | 58.0 | 4.17e-01 | 89.8% | 35.4% |
| 3669277 | 207.1.1.143 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14, LRR_R13L1-DRL21 | 0.67 | 56.0 | 3.92e-01 | 89.8% | 37.4% |
| 3678544 | 207.1.1.103 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 | 0.67 | 57.0 | 4.28e-01 | 89.8% | 48.4% |
| 3447592 | 207.1.1.103 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 | 0.67 | 57.0 | 4.21e-01 | 89.8% | 55.5% |
| 3323829 | 207.1.1.171 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2, LRR_R13L1-DRL21 | 0.65 | 55.0 | 3.79e-01 | 90.4% | 27.3% |
| 3679706 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.63 | 54.0 | 4.44e-01 | 91.6% | 99.0% |
| 3447378 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.63 | 52.0 | 4.52e-01 | 89.2% | 58.8% |
| 3341461 | 207.1.1.171 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2, LRR_R13L1-DRL21 | 0.61 | 52.0 | 4.04e-01 | 92.2% | 56.4% |
| 3367847 | 207.1.1.204 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBD, LRR_At1g61320_AtMIF1 | 0.60 | 52.0 | 3.68e-01 | 93.4% | 42.3% |
| 4933260 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.54 | 30.0 | 3.94e-01 | 76.5% | 100.0% |
| 3167744 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 33.0 | 3.99e-01 | 90.4% | 96.2% |
D2
medium
residues 167-282
Domain cluster:
rep: SRR1747065_scaffold_9_prodigal-single.1__X__X__00024__D551-697
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13306.13 best | LRR_5 | 44.6 | 1.90e-11 | 84.5% | 40.9% |